Variant report

Variant	rs9662363
Chromosome Location	chr1:224343012-224343013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224334889..224338444-chr1:224339776..224343070,5	K562	blood:
2	chr1:224339407..224345322-chr1:224346058..224350848,8	K562	blood:
3	chr1:224334889..224337691-chr1:224341206..224343070,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10916370	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11576702	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11582248	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11582460	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12410321	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12722938	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12736412	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12737029	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12739782	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12749977	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16844823	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16856443	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2008340	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2087795	0.85[ASN][1000 genomes]
rs35177633	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35243286	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35540939	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61826374	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61826409	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61827700	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6656849	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6657195	0.85[ASN][1000 genomes]
rs6687643	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71644775	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71644776	0.85[ASN][1000 genomes]
rs71644777	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757772	chr1:223935220-224363163	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759000	chr1:223935220-224363163	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv427941	chr1:224085052-224363163	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv832692	chr1:224206536-224407717	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv1792939	chr1:224336636-224351023	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224303000-224363400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:224314400-224343400	Weak transcription	Psoas Muscle	Psoas
3	chr1:224316600-224352200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:224320200-224344800	Weak transcription	Gastric	stomach
5	chr1:224320200-224345000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:224320200-224345000	Weak transcription	HUVEC	blood vessel
7	chr1:224320400-224344800	Weak transcription	Small Intestine	intestine
8	chr1:224320400-224345000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:224320400-224345000	Weak transcription	Right Ventricle	heart
10	chr1:224320400-224345200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:224320600-224344000	Weak transcription	Brain Germinal Matrix	brain
12	chr1:224320600-224345000	Weak transcription	Pancreas	Pancrea
13	chr1:224320600-224345200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:224320800-224343200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:224320800-224344200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:224320800-224344800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:224320800-224345200	Weak transcription	Brain Substantia Nigra	brain
18	chr1:224321000-224343200	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:224321000-224343400	Weak transcription	Fetal Brain Male	brain
20	chr1:224321000-224344200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:224321000-224344800	Weak transcription	NHLF	lung
22	chr1:224321000-224345000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:224321000-224345400	Weak transcription	Fetal Heart	heart
24	chr1:224322000-224345400	Weak transcription	HMEC	breast
25	chr1:224322600-224345000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr1:224323000-224343200	Weak transcription	NHDF-Ad	bronchial
27	chr1:224324200-224343800	Weak transcription	HepG2	liver
28	chr1:224325000-224351000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:224326200-224345200	Weak transcription	Colonic Mucosa	Colon
30	chr1:224326800-224344000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:224327000-224345000	Weak transcription	GM12878-XiMat	blood
32	chr1:224327400-224343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:224327400-224343400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:224327400-224344000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr1:224327600-224356400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr1:224327800-224344000	Weak transcription	Left Ventricle	heart
37	chr1:224327800-224345000	Weak transcription	Aorta	Aorta
38	chr1:224327800-224345000	Weak transcription	Esophagus	oesophagus
39	chr1:224328000-224343600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:224328000-224344600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr1:224328200-224343400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr1:224328200-224343800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr1:224328200-224344800	Weak transcription	HSMMtube	muscle
44	chr1:224328200-224345000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr1:224329400-224343400	Weak transcription	Adipose Nuclei	Adipose
46	chr1:224329600-224343200	Weak transcription	Primary B cells from cord blood	blood
47	chr1:224329600-224343200	Weak transcription	Fetal Kidney	kidney
48	chr1:224329600-224343400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr1:224329600-224343600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:224329600-224345200	Weak transcription	Osteobl	bone

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