Variant report

Variant	rs71666242
Chromosome Location	chr1:90666773-90666774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1004440	1.00[ASN][1000 genomes]
rs12723369	1.00[ASN][1000 genomes]
rs12724648	1.00[ASN][1000 genomes]
rs12732838	1.00[ASN][1000 genomes]
rs12744478	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12752313	1.00[ASN][1000 genomes]
rs12754978	1.00[ASN][1000 genomes]
rs17510469	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34919097	1.00[ASN][1000 genomes]
rs71666243	1.00[ASN][1000 genomes]
rs71666253	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830570	chr1:90525215-90685526	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90664800-90666800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:90664800-90667000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:90665800-90666800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:90665800-90667000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:90666000-90672200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:90666200-90666800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:90666200-90666800	Enhancers	Gastric	stomach
8	chr1:90666200-90666800	Enhancers	Lung	lung
9	chr1:90666200-90666800	Enhancers	Pancreas	Pancrea
10	chr1:90666200-90667200	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:90666200-90667200	Enhancers	Fetal Lung	lung
12	chr1:90666200-90667400	Enhancers	Fetal Heart	heart
13	chr1:90666400-90668000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:90666600-90666800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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