Variant report

Variant	rs71666243
Chromosome Location	chr1:90670676-90670677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1004440	1.00[ASN][1000 genomes]
rs12723369	1.00[ASN][1000 genomes]
rs12724648	1.00[ASN][1000 genomes]
rs12732838	1.00[ASN][1000 genomes]
rs12744478	1.00[ASN][1000 genomes]
rs12752313	1.00[ASN][1000 genomes]
rs12754978	1.00[ASN][1000 genomes]
rs17510469	1.00[ASN][1000 genomes]
rs34919097	1.00[ASN][1000 genomes]
rs71666242	1.00[ASN][1000 genomes]
rs71666253	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830570	chr1:90525215-90685526	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90666000-90672200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:90669600-90670800	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links