Variant report

Variant	rs7167151
Chromosome Location	chr15:78262991-78262992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10775214	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap]
rs11072726	0.86[GIH][hapmap];0.86[MEX][hapmap]
rs11634300	0.98[EUR][1000 genomes]
rs12900731	0.88[GIH][hapmap]
rs12909162	0.98[EUR][1000 genomes]
rs1837912	0.89[GIH][hapmap];1.00[MEX][hapmap]
rs4316722	0.88[GIH][hapmap]
rs4377127	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap]
rs4564533	0.82[EUR][1000 genomes]
rs4886998	1.00[CEU][hapmap]
rs7170101	0.89[GIH][hapmap];1.00[MEX][hapmap]
rs7174640	1.00[CEU][hapmap]
rs8027530	1.00[CEU][hapmap]
rs8033216	0.89[GIH][hapmap];1.00[MEX][hapmap]
rs8042212	0.85[AMR][1000 genomes]
rs9920180	0.89[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78258800-78275200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:78261200-78263400	Weak transcription	Hela-S3	cervix
3	chr15:78262000-78263200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:78262000-78264200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:78262200-78266200	Weak transcription	NHEK	skin
6	chr15:78262400-78263600	Enhancers	HSMMtube	muscle
7	chr15:78262800-78263000	Enhancers	Left Ventricle	heart
8	chr15:78262800-78264200	Weak transcription	Placenta	Placenta
9	chr15:78262800-78264400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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