Variant report

Variant	rs7169381
Chromosome Location	chr15:78374072-78374073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78372548..78375148-chr15:78394682..78397059,2	MCF-7	breast:
2	chr15:78372399..78375253-chr15:78376362..78378522,3	K562	blood:
3	chr15:78367106..78371199-chr15:78373760..78377158,7	MCF-7	breast:
4	chr15:78368072..78371778-chr15:78372660..78375355,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167202	Chromatin interaction
ENSG00000183476	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11072725	0.81[AMR][1000 genomes]
rs11072726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11633569	0.81[AFR][1000 genomes]
rs11636889	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12595595	0.81[AMR][1000 genomes]
rs12898535	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12913206	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12915731	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12915847	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1348256	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2015951	0.81[AFR][1000 genomes]
rs2044100	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2867984	0.83[AMR][1000 genomes]
rs3972617	0.81[AMR][1000 genomes]
rs4886552	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4886556	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4886987	0.81[AFR][1000 genomes]
rs4886997	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4886998	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4887001	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4887002	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7169882	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7170101	0.80[AMR][1000 genomes]
rs7170286	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7170452	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7175192	0.81[AFR][1000 genomes]
rs7175235	0.83[AMR][1000 genomes]
rs8025423	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8033216	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs894295	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs894296	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs894302	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78370400-78374200	Weak transcription	Colonic Mucosa	Colon
2	chr15:78370400-78374800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:78370400-78374800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:78370400-78374800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:78370400-78375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:78370400-78375000	Weak transcription	Gastric	stomach
7	chr15:78370400-78375000	Weak transcription	Lung	lung
8	chr15:78370400-78375000	Weak transcription	Small Intestine	intestine
9	chr15:78370400-78375600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:78370400-78376600	Weak transcription	Right Atrium	heart
11	chr15:78370400-78377000	Weak transcription	Esophagus	oesophagus
12	chr15:78370600-78374200	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:78370600-78374600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:78370600-78374600	Weak transcription	Primary B cells from cord blood	blood
15	chr15:78370600-78374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:78370600-78374600	Weak transcription	Adipose Nuclei	Adipose
17	chr15:78370600-78374600	Weak transcription	Fetal Stomach	stomach
18	chr15:78370600-78374600	Weak transcription	NHDF-Ad	bronchial
19	chr15:78370600-78374600	Weak transcription	NHEK	skin
20	chr15:78370600-78374600	Weak transcription	NHLF	lung
21	chr15:78370600-78374800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:78370600-78374800	Weak transcription	Fetal Lung	lung
23	chr15:78370600-78375000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:78370600-78375200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:78370600-78376200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:78370600-78376200	Weak transcription	Fetal Brain Female	brain
27	chr15:78370600-78377800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:78370600-78377800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:78370600-78378000	Weak transcription	Osteobl	bone
30	chr15:78370800-78374200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:78370800-78374600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:78370800-78374600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:78370800-78374600	Weak transcription	Brain Anterior Caudate	brain
34	chr15:78370800-78374600	Weak transcription	Fetal Thymus	thymus
35	chr15:78370800-78374600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:78370800-78374600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:78370800-78374600	Weak transcription	GM12878-XiMat	blood
38	chr15:78370800-78375000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:78370800-78375600	Weak transcription	Fetal Brain Male	brain
40	chr15:78370800-78376400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:78370800-78376400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:78370800-78376600	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:78370800-78380000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr15:78370800-78380400	Weak transcription	Liver	Liver
45	chr15:78371000-78374800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:78371000-78374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:78372200-78374800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:78372600-78374200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:78372600-78374400	Weak transcription	Stomach Mucosa	stomach
50	chr15:78372600-78376600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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