Variant report

Variant	rs12913206
Chromosome Location	chr15:78375735-78375736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78335660..78338576-chr15:78374188..78376169,2	MCF-7	breast:
2	chr15:78375126..78377981-chr15:78392341..78394004,2	MCF-7	breast:
3	chr15:78375346..78377789-chr15:78388044..78389607,2	MCF-7	breast:
4	chr15:78367106..78371199-chr15:78373760..78377158,7	MCF-7	breast:
5	chr15:78347928..78349510-chr15:78375068..78376834,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167202	Chromatin interaction
ENSG00000183476	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1053506	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10775214	1.00[JPT][hapmap]
rs10775215	1.00[ASN][1000 genomes]
rs11072725	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11072726	1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11633329	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11633569	1.00[ASN][1000 genomes]
rs11636889	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12595595	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12898535	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12900731	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12901492	1.00[ASN][1000 genomes]
rs12915731	1.00[JPT][hapmap]
rs12915847	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12916320	1.00[ASN][1000 genomes]
rs1348256	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1837911	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1837912	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2015951	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2867984	1.00[ASN][1000 genomes]
rs28680277	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3972617	1.00[ASN][1000 genomes]
rs4243072	1.00[ASN][1000 genomes]
rs4316722	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4411474	1.00[ASN][1000 genomes]
rs4886551	1.00[ASN][1000 genomes]
rs4886552	1.00[ASN][1000 genomes]
rs4886556	1.00[ASN][1000 genomes]
rs4886985	1.00[ASN][1000 genomes]
rs4886986	1.00[ASN][1000 genomes]
rs4886987	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886990	1.00[ASN][1000 genomes]
rs4886991	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886993	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886997	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886998	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4887001	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4887002	1.00[ASN][1000 genomes]
rs4887003	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4887004	1.00[ASN][1000 genomes]
rs61732053	1.00[ASN][1000 genomes]
rs7163997	1.00[ASN][1000 genomes]
rs7169381	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7169882	1.00[ASN][1000 genomes]
rs7170101	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7170286	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7170452	1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7175192	1.00[ASN][1000 genomes]
rs7175235	1.00[ASN][1000 genomes]
rs7175975	1.00[ASN][1000 genomes]
rs7180684	1.00[JPT][hapmap]
rs8025423	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8033216	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs894295	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs894296	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs894302	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9788640	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9920180	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78370400-78376600	Weak transcription	Right Atrium	heart
2	chr15:78370400-78377000	Weak transcription	Esophagus	oesophagus
3	chr15:78370600-78376200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:78370600-78376200	Weak transcription	Fetal Brain Female	brain
5	chr15:78370600-78377800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:78370600-78377800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:78370600-78378000	Weak transcription	Osteobl	bone
8	chr15:78370800-78376400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr15:78370800-78376400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:78370800-78376600	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:78370800-78380000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr15:78370800-78380400	Weak transcription	Liver	Liver
13	chr15:78372600-78376600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:78373600-78377200	Enhancers	Fetal Intestine Small	intestine
15	chr15:78374000-78376400	Enhancers	Fetal Muscle Trunk	muscle
16	chr15:78374000-78377200	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr15:78374000-78377400	Enhancers	Placenta	Placenta
18	chr15:78374000-78378000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:78374000-78378800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:78374200-78377200	Enhancers	Colonic Mucosa	Colon
21	chr15:78374200-78377600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr15:78374200-78378800	Enhancers	Fetal Muscle Leg	muscle
23	chr15:78374400-78375800	Enhancers	Stomach Mucosa	stomach
24	chr15:78374600-78375800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:78374600-78375800	Enhancers	Primary B cells from cord blood	blood
26	chr15:78374600-78377200	Enhancers	Fetal Stomach	stomach
27	chr15:78374600-78377400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr15:78374600-78377400	Enhancers	Spleen	Spleen
29	chr15:78374600-78379000	Enhancers	Adipose Nuclei	Adipose
30	chr15:78374800-78376000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:78374800-78377200	Enhancers	Fetal Intestine Large	intestine
32	chr15:78374800-78377600	Enhancers	Duodenum Mucosa	Duodenum
33	chr15:78375000-78375800	Enhancers	Stomach Smooth Muscle	stomach
34	chr15:78375000-78376400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:78375000-78377200	Enhancers	Lung	lung
36	chr15:78375000-78377600	Enhancers	Small Intestine	intestine
37	chr15:78375200-78376200	Enhancers	HepG2	liver
38	chr15:78375200-78376400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:78375200-78376400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:78375200-78376800	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr15:78375200-78377600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:78375400-78376200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:78375400-78376400	Weak transcription	Fetal Lung	lung
44	chr15:78375400-78376400	Weak transcription	GM12878-XiMat	blood
45	chr15:78375400-78377000	Enhancers	Brain Anterior Caudate	brain
46	chr15:78375400-78377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:78375400-78377600	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr15:78375400-78378000	Weak transcription	NHLF	lung
49	chr15:78375400-78383800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:78375600-78376000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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