Variant report

Variant	rs1837911
Chromosome Location	chr15:78329479-78329480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78324962..78326777-chr15:78328172..78330506,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1053506	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10775215	1.00[ASN][1000 genomes]
rs11072725	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11072726	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11633329	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11633569	1.00[ASN][1000 genomes]
rs11636889	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12595595	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12898535	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12900731	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12901492	1.00[ASN][1000 genomes]
rs12913206	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12915731	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12915847	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12916320	1.00[ASN][1000 genomes]
rs1348256	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16969502	1.00[CEU][hapmap]
rs1837912	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2015951	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2867984	1.00[ASN][1000 genomes]
rs28680277	1.00[ASN][1000 genomes]
rs3972617	1.00[ASN][1000 genomes]
rs4243072	1.00[ASN][1000 genomes]
rs4316722	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4411474	1.00[ASN][1000 genomes]
rs4886551	1.00[ASN][1000 genomes]
rs4886552	1.00[ASN][1000 genomes]
rs4886556	1.00[ASN][1000 genomes]
rs4886985	1.00[ASN][1000 genomes]
rs4886986	1.00[ASN][1000 genomes]
rs4886987	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886990	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886991	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886993	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886997	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4886998	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4887001	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4887002	1.00[ASN][1000 genomes]
rs4887003	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4887004	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732053	1.00[ASN][1000 genomes]
rs7163997	1.00[ASN][1000 genomes]
rs7169882	1.00[ASN][1000 genomes]
rs7170101	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7170286	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7170452	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7174640	1.00[CEU][hapmap]
rs7175192	1.00[ASN][1000 genomes]
rs7175235	1.00[ASN][1000 genomes]
rs7175975	1.00[ASN][1000 genomes]
rs7180684	1.00[JPT][hapmap];0.84[AFR][1000 genomes]
rs8025423	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8033216	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs894295	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs894296	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs894302	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9788640	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9920180	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78305400-78329800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:78309200-78330200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:78309200-78330800	Weak transcription	A549	lung
8	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:78316000-78332400	Weak transcription	Hela-S3	cervix
10	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:78317800-78331000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:78317800-78344400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:78317800-78344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:78320200-78334400	Weak transcription	Aorta	Aorta
16	chr15:78320400-78331800	Weak transcription	Esophagus	oesophagus
17	chr15:78321200-78343800	Weak transcription	NHEK	skin
18	chr15:78322200-78336600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:78322200-78341000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:78322400-78336600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:78324000-78332200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:78324400-78330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:78324600-78334400	Weak transcription	Ovary	ovary
24	chr15:78325600-78337800	Genic enhancers	Fetal Thymus	thymus
25	chr15:78325800-78333600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr15:78326000-78331600	Enhancers	HUVEC	blood vessel
27	chr15:78326200-78332000	Genic enhancers	Fetal Intestine Small	intestine
28	chr15:78326200-78332800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:78326400-78331600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr15:78326400-78332000	Genic enhancers	Fetal Muscle Leg	muscle
31	chr15:78326600-78329600	Genic enhancers	Fetal Intestine Large	intestine
32	chr15:78326600-78329600	Enhancers	Stomach Mucosa	stomach
33	chr15:78326600-78331200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:78326600-78331200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:78326600-78331400	Enhancers	Spleen	Spleen
36	chr15:78326600-78332000	Genic enhancers	Placenta	Placenta
37	chr15:78326600-78332000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
38	chr15:78327200-78330400	Enhancers	Brain Anterior Caudate	brain
39	chr15:78327400-78329600	Enhancers	Liver	Liver
40	chr15:78327400-78330200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr15:78327400-78330400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:78327400-78330800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:78327400-78339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:78327600-78330400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:78327600-78331000	Enhancers	Thymus	Thymus
46	chr15:78327600-78331600	Genic enhancers	Rectal Mucosa Donor 29	rectum
47	chr15:78327600-78332000	Enhancers	Primary hematopoietic stem cells	blood
48	chr15:78327600-78333600	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:78327800-78330000	Enhancers	Primary neutrophils fromperipheralblood	blood

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