Variant report

Variant	rs61732053
Chromosome Location	chr15:78337303-78337304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78337006..78339550-chr15:78339684..78342171,2	MCF-7	breast:
2	chr15:78335660..78338576-chr15:78374188..78376169,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1053506	1.00[ASN][1000 genomes]
rs10775215	1.00[ASN][1000 genomes]
rs11072725	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072726	1.00[ASN][1000 genomes]
rs11633329	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633569	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636889	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854102	0.91[EUR][1000 genomes]
rs12595595	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12898535	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12900731	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901492	1.00[ASN][1000 genomes]
rs12913206	1.00[ASN][1000 genomes]
rs12915731	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12915847	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916320	1.00[ASN][1000 genomes]
rs1348256	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837911	1.00[ASN][1000 genomes]
rs1837912	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015951	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044100	0.97[EUR][1000 genomes]
rs2867984	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28680277	1.00[ASN][1000 genomes]
rs3972617	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243072	1.00[ASN][1000 genomes]
rs4316722	1.00[ASN][1000 genomes]
rs4411474	1.00[ASN][1000 genomes]
rs4886551	1.00[ASN][1000 genomes]
rs4886552	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886556	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886985	1.00[ASN][1000 genomes]
rs4886986	1.00[ASN][1000 genomes]
rs4886987	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886990	1.00[ASN][1000 genomes]
rs4886991	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886993	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886997	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886998	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887001	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887002	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887003	1.00[ASN][1000 genomes]
rs4887004	1.00[ASN][1000 genomes]
rs7163997	1.00[ASN][1000 genomes]
rs7169882	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170101	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170286	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170452	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175192	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175235	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175975	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025423	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033216	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894295	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894296	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894302	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788640	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920180	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:78317800-78344400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:78317800-78344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:78321200-78343800	Weak transcription	NHEK	skin
11	chr15:78322200-78341000	Weak transcription	Brain Germinal Matrix	brain
12	chr15:78325600-78337800	Genic enhancers	Fetal Thymus	thymus
13	chr15:78327400-78339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:78327800-78342000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:78328000-78341800	Weak transcription	Fetal Brain Male	brain
17	chr15:78328400-78339000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:78328400-78342200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:78328600-78342200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:78329000-78342400	Weak transcription	Fetal Heart	heart
21	chr15:78329600-78339000	Weak transcription	Stomach Mucosa	stomach
22	chr15:78330600-78342800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:78331000-78339200	Weak transcription	Brain Angular Gyrus	brain
24	chr15:78331200-78344400	Weak transcription	Psoas Muscle	Psoas
25	chr15:78331400-78339600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:78331400-78348600	Weak transcription	A549	lung
27	chr15:78331600-78337400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:78331600-78339000	Weak transcription	Right Ventricle	heart
29	chr15:78331600-78339800	Weak transcription	HUVEC	blood vessel
30	chr15:78331600-78348600	Weak transcription	K562	blood
31	chr15:78332000-78342200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:78332600-78338600	Strong transcription	Dnd41	blood
33	chr15:78332600-78342000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:78332800-78339000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:78332800-78343000	Weak transcription	Hela-S3	cervix
36	chr15:78333400-78337400	Strong transcription	HSMMtube	muscle
37	chr15:78333400-78339000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:78333800-78337800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:78333800-78338200	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr15:78334000-78337400	Genic enhancers	Primary T cells fromperipheralblood	blood
41	chr15:78334000-78337800	Strong transcription	GM12878-XiMat	blood
42	chr15:78334000-78337800	Strong transcription	Osteobl	bone
43	chr15:78334200-78337400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:78334400-78337600	Strong transcription	Liver	Liver
45	chr15:78334600-78337800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:78334800-78337400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:78334800-78342200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr15:78335000-78342000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:78335200-78340000	Weak transcription	Esophagus	oesophagus
50	chr15:78335400-78339000	Weak transcription	Primary B cells from cord blood	blood

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