Variant report

Variant	rs7171201
Chromosome Location	chr15:42755142-42755143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12101559	0.83[AMR][1000 genomes]
rs12438240	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16973261	0.85[AMR][1000 genomes]
rs28745877	0.83[EUR][1000 genomes]
rs3742996	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4924677	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4924679	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4924680	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4924682	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55671734	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57734638	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58567518	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59091866	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59206762	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59414917	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59908459	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60328984	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7169767	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7180315	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7181688	0.85[AMR][1000 genomes]
rs73402745	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8026817	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8036255	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs934876	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42701200-42766600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:42720400-42759200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:42737200-42764800	Weak transcription	A549	lung
4	chr15:42744000-42757400	Weak transcription	Gastric	stomach
5	chr15:42744000-42757600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:42744200-42755200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr15:42744200-42755200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:42744200-42755600	Weak transcription	Spleen	Spleen
9	chr15:42744200-42756800	Weak transcription	Dnd41	blood
10	chr15:42744200-42757000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:42744200-42757400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:42744200-42757400	Weak transcription	HepG2	liver
13	chr15:42744200-42757600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:42744200-42762200	Weak transcription	K562	blood
15	chr15:42744200-42763200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:42744200-42767000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:42744200-42781800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:42744200-42782400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:42746800-42755600	Weak transcription	Hela-S3	cervix
20	chr15:42747200-42755200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:42749200-42761800	Weak transcription	Brain Germinal Matrix	brain
22	chr15:42749600-42764600	Weak transcription	Colonic Mucosa	Colon
23	chr15:42749800-42755400	Weak transcription	Lung	lung
24	chr15:42749800-42756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:42749800-42757400	Weak transcription	Placenta	Placenta
26	chr15:42749800-42758000	Weak transcription	Pancreas	Pancrea
27	chr15:42750000-42755600	Weak transcription	Esophagus	oesophagus
28	chr15:42750000-42782600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:42750200-42756000	Weak transcription	Primary T cells from cord blood	blood
30	chr15:42750200-42763600	Weak transcription	Right Atrium	heart
31	chr15:42750200-42766400	Weak transcription	Right Ventricle	heart
32	chr15:42750200-42782400	Weak transcription	Aorta	Aorta
33	chr15:42750400-42755600	Weak transcription	Brain Anterior Caudate	brain
34	chr15:42750400-42756800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:42750400-42757200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:42750400-42757200	Weak transcription	Fetal Brain Female	brain
37	chr15:42750400-42761600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:42750400-42762800	Weak transcription	HMEC	breast
39	chr15:42750400-42765000	Weak transcription	Fetal Brain Male	brain
40	chr15:42750600-42755400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:42750600-42755600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:42750600-42756600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:42750600-42756600	Weak transcription	NHEK	skin
44	chr15:42750600-42756800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:42750600-42756800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:42750600-42756800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:42750600-42757200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr15:42750600-42757200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:42750600-42757200	Weak transcription	HUVEC	blood vessel
50	chr15:42750600-42757400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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