Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16942023	1.00[EUR][1000 genomes]
rs16942031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774353	1.00[EUR][1000 genomes]
rs56343339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57051400	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58297012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58573650	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59279644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494161	1.00[EUR][1000 genomes]
rs7182151	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425252	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425257	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425266	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017031	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017976	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017977	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8026395	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv569607	chr15:60303749-60347452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1043235	chr15:60318001-60350625	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044105	chr15:60318001-60354519	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60316400-60319200	Enhancers	Ovary	ovary
2	chr15:60317800-60324200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:60318000-60319200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:60318400-60319600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:60318600-60319000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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