Variant report
| Variant | rs8026395 |
|---|---|
| Chromosome Location | chr15:60327069-60327070 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:60321662..60323517-chr15:60325565..60328073,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs16942023 | 1.00[EUR][1000 genomes] |
| rs16942031 | 1.00[EUR][1000 genomes] |
| rs4774353 | 1.00[EUR][1000 genomes] |
| rs56343339 | 1.00[EUR][1000 genomes] |
| rs57051400 | 1.00[EUR][1000 genomes] |
| rs58297012 | 1.00[EUR][1000 genomes] |
| rs58573650 | 1.00[EUR][1000 genomes] |
| rs59279644 | 1.00[EUR][1000 genomes] |
| rs6494161 | 1.00[EUR][1000 genomes] |
| rs7171686 | 1.00[EUR][1000 genomes] |
| rs7182151 | 1.00[EUR][1000 genomes] |
| rs7183502 | 1.00[EUR][1000 genomes] |
| rs73425248 | 1.00[EUR][1000 genomes] |
| rs73425249 | 1.00[EUR][1000 genomes] |
| rs73425250 | 1.00[EUR][1000 genomes] |
| rs73425252 | 1.00[EUR][1000 genomes] |
| rs73425257 | 1.00[EUR][1000 genomes] |
| rs73425258 | 1.00[EUR][1000 genomes] |
| rs73425266 | 1.00[EUR][1000 genomes] |
| rs74017031 | 1.00[EUR][1000 genomes] |
| rs74017976 | 1.00[EUR][1000 genomes] |
| rs74017977 | 1.00[EUR][1000 genomes] |
| rs8035079 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv833028 | chr15:60227565-60418112 | Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv569607 | chr15:60303749-60347452 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1043235 | chr15:60318001-60350625 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1044105 | chr15:60318001-60354519 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv1038620 | chr15:60319463-60349494 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv542404 | chr15:60319463-60349494 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 8 | nsv1045741 | chr15:60323323-60350625 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
