Variant report

Variant	rs7175324
Chromosome Location	chr15:74245007-74245008
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74221858..74224522-chr15:74243431..74247187,3	MCF-7	breast:
2	chr15:74220838..74222691-chr15:74242303..74245094,2	MCF-7	breast:
3	chr15:74227809..74230483-chr15:74244545..74246597,2	MCF-7	breast:
4	chr15:74234935..74236699-chr15:74244847..74247930,3	K562	blood:
5	chr15:74243548..74247023-chr15:74247125..74250024,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12442139	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12442211	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12899085	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2415206	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4547288	0.81[ASN][1000 genomes]
rs734854	0.81[AMR][1000 genomes]
rs8039404	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74234800-74249400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:74237200-74247800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:74240600-74245800	Genic enhancers	HSMM	muscle
4	chr15:74241200-74246400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:74242000-74246600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:74242200-74245200	Weak transcription	Gastric	stomach
7	chr15:74242200-74246000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:74242600-74246200	Genic enhancers	NHLF	lung
9	chr15:74242600-74248400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:74242800-74245400	Genic enhancers	Fetal Lung	lung
11	chr15:74242800-74245800	Genic enhancers	Muscle Satellite Cultured Cells	--
12	chr15:74242800-74245800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:74242800-74248000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:74242800-74251200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:74243000-74245800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:74243000-74246200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:74243000-74246600	Genic enhancers	Fetal Stomach	stomach
18	chr15:74243000-74249000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:74243200-74245600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:74243200-74245800	Enhancers	Fetal Heart	heart
21	chr15:74243200-74245800	Enhancers	Right Atrium	heart
22	chr15:74243200-74246200	Enhancers	Placenta	Placenta
23	chr15:74243400-74245200	Enhancers	Fetal Intestine Small	intestine
24	chr15:74243400-74245600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:74243400-74246000	Enhancers	Ovary	ovary
26	chr15:74243400-74246600	Enhancers	Fetal Brain Male	brain
27	chr15:74243400-74247000	Enhancers	Fetal Thymus	thymus
28	chr15:74243600-74245200	Enhancers	Pancreas	Pancrea
29	chr15:74243600-74245400	Enhancers	Brain Anterior Caudate	brain
30	chr15:74243600-74246000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr15:74243800-74245200	Enhancers	Colonic Mucosa	Colon
32	chr15:74243800-74245200	Enhancers	Fetal Kidney	kidney
33	chr15:74243800-74245600	Enhancers	Primary hematopoietic stem cells	blood
34	chr15:74244000-74249800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:74244000-74250800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:74244000-74251000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:74244200-74245400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
38	chr15:74244200-74247000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:74244200-74249000	Weak transcription	Esophagus	oesophagus
40	chr15:74244400-74245600	Weak transcription	Hela-S3	cervix
41	chr15:74244400-74245800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:74244400-74245800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr15:74244400-74246000	Genic enhancers	Stomach Smooth Muscle	stomach
44	chr15:74244400-74246400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:74244400-74246400	Genic enhancers	HSMMtube	muscle
46	chr15:74244400-74247800	Weak transcription	HMEC	breast
47	chr15:74244400-74248200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:74244400-74248200	Weak transcription	HUVEC	blood vessel
49	chr15:74244400-74248800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:74244400-74250200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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