Variant report

Variant	rs12442139
Chromosome Location	chr15:74245486-74245487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74221858..74224522-chr15:74243431..74247187,3	MCF-7	breast:
2	chr15:74245232..74249723-chr15:74250188..74253151,4	MCF-7	breast:
3	chr15:74227809..74230483-chr15:74244545..74246597,2	MCF-7	breast:
4	chr15:74234935..74236699-chr15:74244847..74247930,3	K562	blood:
5	chr15:74238012..74239922-chr15:74245063..74247153,2	MCF-7	breast:
6	chr15:74243548..74247023-chr15:74247125..74250024,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10851866	0.80[ASN][1000 genomes]
rs12442211	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899085	0.98[ASN][1000 genomes]
rs2415206	0.98[ASN][1000 genomes]
rs4547288	0.84[ASN][1000 genomes]
rs4886820	0.81[ASN][1000 genomes]
rs7175324	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74234800-74249400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:74237200-74247800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:74240600-74245800	Genic enhancers	HSMM	muscle
4	chr15:74241200-74246400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:74242000-74246600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:74242200-74246000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:74242600-74246200	Genic enhancers	NHLF	lung
8	chr15:74242600-74248400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:74242800-74245800	Genic enhancers	Muscle Satellite Cultured Cells	--
10	chr15:74242800-74245800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:74242800-74248000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:74242800-74251200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:74243000-74245800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:74243000-74246200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:74243000-74246600	Genic enhancers	Fetal Stomach	stomach
16	chr15:74243000-74249000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:74243200-74245600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:74243200-74245800	Enhancers	Fetal Heart	heart
19	chr15:74243200-74245800	Enhancers	Right Atrium	heart
20	chr15:74243200-74246200	Enhancers	Placenta	Placenta
21	chr15:74243400-74245600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr15:74243400-74246000	Enhancers	Ovary	ovary
23	chr15:74243400-74246600	Enhancers	Fetal Brain Male	brain
24	chr15:74243400-74247000	Enhancers	Fetal Thymus	thymus
25	chr15:74243600-74246000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr15:74243800-74245600	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:74244000-74249800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:74244000-74250800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:74244000-74251000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr15:74244200-74247000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:74244200-74249000	Weak transcription	Esophagus	oesophagus
32	chr15:74244400-74245600	Weak transcription	Hela-S3	cervix
33	chr15:74244400-74245800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:74244400-74245800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:74244400-74246000	Genic enhancers	Stomach Smooth Muscle	stomach
36	chr15:74244400-74246400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:74244400-74246400	Genic enhancers	HSMMtube	muscle
38	chr15:74244400-74247800	Weak transcription	HMEC	breast
39	chr15:74244400-74248200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:74244400-74248200	Weak transcription	HUVEC	blood vessel
41	chr15:74244400-74248800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr15:74244400-74250200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:74244600-74248400	Weak transcription	Thymus	Thymus
44	chr15:74244800-74245800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:74244800-74245800	Strong transcription	NHDF-Ad	bronchial
46	chr15:74244800-74246000	Strong transcription	Aorta	Aorta
47	chr15:74244800-74246000	Strong transcription	Osteobl	bone
48	chr15:74244800-74246200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:74245000-74245600	Genic enhancers	Fetal Muscle Leg	muscle
50	chr15:74245000-74245600	Strong transcription	NH-A	brain

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