Variant report

Variant	rs10851866
Chromosome Location	chr15:74277795-74277796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74276805..74281902-chr15:74284117..74288991,5	K562	blood:
2	chr15:74276152..74278081-chr15:74290806..74293651,2	K562	blood:

Variant related genes	Relation type
ENSG00000067221	Chromatin interaction
ENSG00000140464	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1052242	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1052246	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10744964	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10851867	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10851868	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11072458	0.92[ASN][1000 genomes]
rs11072461	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072462	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072463	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633735	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11635930	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11636016	0.80[AMR][1000 genomes]
rs11636065	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11636150	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11854321	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857498	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12442139	0.80[ASN][1000 genomes]
rs12442211	0.80[ASN][1000 genomes]
rs12593528	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12899085	0.82[ASN][1000 genomes]
rs12902857	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12902945	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12910581	0.83[AMR][1000 genomes]
rs12911807	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12911984	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2165242	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2277599	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2304716	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2415206	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3784561	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3784562	0.96[ASN][1000 genomes]
rs4287518	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4547288	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4886820	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886845	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4886846	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56194867	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7183908	0.84[ASN][1000 genomes]
rs734854	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs743580	0.89[ASN][1000 genomes]
rs752004	0.88[ASN][1000 genomes]
rs8027327	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8027447	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8028557	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8038991	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8039404	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9479	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10851866	STOML1	cis	lung	GTEx

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74272600-74283800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:74272800-74281000	Enhancers	Primary hematopoietic stem cells	blood
3	chr15:74273200-74280000	Enhancers	Left Ventricle	heart
4	chr15:74273800-74278000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:74273800-74278600	Enhancers	Primary B cells from peripheral blood	blood
6	chr15:74273800-74278600	Enhancers	NH-A	brain
7	chr15:74273800-74279600	Enhancers	Right Atrium	heart
8	chr15:74273800-74280200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:74273800-74283600	Enhancers	HMEC	breast
10	chr15:74273800-74283600	Enhancers	NHDF-Ad	bronchial
11	chr15:74273800-74283800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:74274000-74277800	Enhancers	Esophagus	oesophagus
13	chr15:74274000-74278400	Enhancers	Primary B cells from cord blood	blood
14	chr15:74274200-74278000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr15:74274600-74281800	Strong transcription	Brain Germinal Matrix	brain
16	chr15:74274600-74284000	Weak transcription	Ovary	ovary
17	chr15:74274800-74283800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:74275000-74277800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:74275000-74278000	Enhancers	Colonic Mucosa	Colon
20	chr15:74275000-74278400	Enhancers	Fetal Heart	heart
21	chr15:74275000-74279000	Enhancers	HSMM	muscle
22	chr15:74275000-74281200	Weak transcription	K562	blood
23	chr15:74275000-74283600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:74275000-74284000	Weak transcription	Aorta	Aorta
25	chr15:74275200-74279200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:74275400-74278000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:74275400-74279400	Genic enhancers	Thymus	Thymus
28	chr15:74275600-74278400	Genic enhancers	Fetal Stomach	stomach
29	chr15:74275600-74279000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:74275600-74279400	Enhancers	Adipose Nuclei	Adipose
31	chr15:74275600-74281400	Strong transcription	Primary T cells from cord blood	blood
32	chr15:74275800-74277800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:74275800-74278200	Enhancers	Small Intestine	intestine
34	chr15:74275800-74278400	Genic enhancers	Spleen	Spleen
35	chr15:74275800-74280000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:74275800-74281400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:74275800-74281800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:74275800-74281800	Genic enhancers	Fetal Muscle Trunk	muscle
39	chr15:74275800-74281800	Genic enhancers	Placenta	Placenta
40	chr15:74275800-74282800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr15:74276000-74278000	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr15:74276000-74278200	Genic enhancers	Osteobl	bone
43	chr15:74276000-74279000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:74276000-74280800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:74276000-74281000	Genic enhancers	Right Ventricle	heart
46	chr15:74276000-74281000	Genic enhancers	NHLF	lung
47	chr15:74276000-74281200	Genic enhancers	Lung	lung
48	chr15:74276000-74281800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
49	chr15:74276000-74282800	Weak transcription	Fetal Brain Male	brain
50	chr15:74276000-74283400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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