Variant report

Variant	rs11072458
Chromosome Location	chr15:74256407-74256408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74218602..74222336-chr15:74255703..74258772,3	MCF-7	breast:
2	chr15:74243136..74244116-chr15:74256372..74257374,4	MCF-7	breast:
3	chr15:74246924..74252106-chr15:74256220..74259297,4	MCF-7	breast:
4	chr15:74249498..74251558-chr15:74255585..74258590,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129038	Chromatin interaction
ENSG00000261801	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10162627	0.86[CEU][hapmap]
rs1052242	0.81[CEU][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1052246	0.84[ASN][1000 genomes]
rs10851866	0.92[ASN][1000 genomes]
rs10851867	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10851868	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11072461	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11072462	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11072463	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11072464	0.86[CEU][hapmap]
rs11633735	0.85[ASN][1000 genomes]
rs11635930	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11636016	0.81[CEU][hapmap]
rs11636065	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11636150	0.84[ASN][1000 genomes]
rs11854321	0.89[ASN][1000 genomes]
rs11857498	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12442211	0.82[JPT][hapmap]
rs12592370	0.81[CEU][hapmap]
rs12593528	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12899085	0.80[ASN][1000 genomes]
rs12902857	0.85[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12902945	0.84[ASN][1000 genomes]
rs12911807	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12911984	0.84[ASN][1000 genomes]
rs2165242	0.85[ASN][1000 genomes]
rs2277599	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2304716	0.81[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2304717	0.85[CEU][hapmap]
rs2415206	0.80[ASN][1000 genomes]
rs3784561	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3784562	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4287518	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4547288	0.94[ASN][1000 genomes]
rs4886820	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886844	0.81[CEU][hapmap]
rs4886845	0.84[ASN][1000 genomes]
rs4886846	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56194867	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs734854	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs743580	0.81[ASN][1000 genomes]
rs752004	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs8027327	0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs8027447	0.80[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs8027774	0.82[CEU][hapmap]
rs8028557	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8038991	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8039404	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8043489	0.82[CEU][hapmap]
rs9479	0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74245400-74257400	Weak transcription	Fetal Lung	lung
2	chr15:74248200-74257200	Weak transcription	Right Ventricle	heart
3	chr15:74249400-74257400	Weak transcription	Adipose Nuclei	Adipose
4	chr15:74249800-74257400	Weak transcription	A549	lung
5	chr15:74250000-74257200	Weak transcription	Gastric	stomach
6	chr15:74250200-74257400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:74251800-74257200	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:74252000-74256600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:74252000-74257200	Weak transcription	Stomach Mucosa	stomach
10	chr15:74252200-74257200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:74252200-74257200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:74252400-74256600	Weak transcription	GM12878-XiMat	blood
13	chr15:74252400-74257000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:74252400-74257000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:74252400-74257000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:74252400-74257000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:74252400-74257000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:74252400-74257200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:74252400-74257200	Weak transcription	Primary B cells from cord blood	blood
20	chr15:74252400-74257200	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:74252400-74257200	Weak transcription	Placenta	Placenta
22	chr15:74252400-74257200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:74252400-74257200	Weak transcription	HMEC	breast
24	chr15:74252400-74257200	Weak transcription	HSMM	muscle
25	chr15:74252400-74257200	Weak transcription	NH-A	brain
26	chr15:74252400-74257200	Weak transcription	NHLF	lung
27	chr15:74252400-74257400	Weak transcription	NHDF-Ad	bronchial
28	chr15:74252600-74257000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:74252600-74257200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:74252600-74257200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:74252800-74257200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:74252800-74257200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:74253000-74257200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:74253000-74257200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr15:74253400-74257000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:74254600-74257200	Weak transcription	Fetal Brain Male	brain
37	chr15:74254800-74257400	Weak transcription	Spleen	Spleen
38	chr15:74255000-74257200	Weak transcription	Osteobl	bone
39	chr15:74255200-74256600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:74255200-74257400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:74255200-74257400	Weak transcription	HSMMtube	muscle
42	chr15:74255400-74257200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:74255800-74257400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:74255800-74260600	Weak transcription	HUVEC	blood vessel
45	chr15:74256400-74256600	Enhancers	Fetal Brain Female	brain
46	chr15:74256400-74257200	Enhancers	Primary T cells from cord blood	blood
47	chr15:74256400-74257200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr15:74256400-74257200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr15:74256400-74257200	Enhancers	Thymus	Thymus
50	chr15:74256400-74257200	Enhancers	Dnd41	blood

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