Variant report

Variant	rs743580
Chromosome Location	chr15:74328116-74328117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74218748..74221720-chr15:74327759..74329413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261801	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1052242	0.95[ASN][1000 genomes]
rs1052246	0.95[ASN][1000 genomes]
rs10851866	0.89[ASN][1000 genomes]
rs10851867	0.87[ASN][1000 genomes]
rs10851868	0.95[ASN][1000 genomes]
rs10851869	0.91[AFR][1000 genomes]
rs11072458	0.81[ASN][1000 genomes]
rs11072461	0.88[ASN][1000 genomes]
rs11072462	0.89[ASN][1000 genomes]
rs11072463	0.90[ASN][1000 genomes]
rs11633735	0.92[ASN][1000 genomes]
rs11635930	0.89[ASN][1000 genomes]
rs11636065	0.95[ASN][1000 genomes]
rs11636150	0.95[ASN][1000 genomes]
rs11854321	0.89[ASN][1000 genomes]
rs11857498	0.89[ASN][1000 genomes]
rs12593528	0.90[ASN][1000 genomes]
rs12902857	0.95[ASN][1000 genomes]
rs12902945	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12910581	0.80[AFR][1000 genomes]
rs12911807	0.91[ASN][1000 genomes]
rs12911984	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2165242	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2277599	0.95[ASN][1000 genomes]
rs2304716	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3784561	0.89[ASN][1000 genomes]
rs3784562	0.88[ASN][1000 genomes]
rs4287518	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4547288	0.85[ASN][1000 genomes]
rs4886820	0.87[ASN][1000 genomes]
rs4886845	0.95[ASN][1000 genomes]
rs4886846	0.93[ASN][1000 genomes]
rs56194867	0.89[ASN][1000 genomes]
rs7183908	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs734854	0.90[ASN][1000 genomes]
rs752004	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8027327	0.95[ASN][1000 genomes]
rs8027447	0.95[ASN][1000 genomes]
rs8028557	0.89[ASN][1000 genomes]
rs8038991	0.87[ASN][1000 genomes]
rs8039404	0.84[ASN][1000 genomes]
rs9479	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv518316	chr15:74290993-74331083	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv457203	chr15:74308940-74347723	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv569971	chr15:74308940-74347723	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv510666	chr15:74310738-74394745	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74288200-74331000	Weak transcription	Fetal Heart	heart
2	chr15:74289800-74331000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:74292000-74329200	Weak transcription	Fetal Brain Male	brain
4	chr15:74302400-74331000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:74303600-74331600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:74306400-74330600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr15:74311000-74330400	Strong transcription	GM12878-XiMat	blood
8	chr15:74312800-74330600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:74313000-74338600	Strong transcription	Primary T cells from cord blood	blood
10	chr15:74313600-74330000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:74314200-74338200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:74314400-74330400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:74314600-74330200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:74314600-74330400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:74314600-74338000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:74314800-74330400	Strong transcription	NHEK	skin
17	chr15:74316000-74330600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr15:74316400-74340400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:74318400-74329000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:74318400-74329400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:74318400-74331000	Weak transcription	Hela-S3	cervix
22	chr15:74318400-74331000	Weak transcription	K562	blood
23	chr15:74318400-74340200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:74318400-74340400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:74318800-74330800	Strong transcription	Osteobl	bone
26	chr15:74319200-74329000	Strong transcription	NHLF	lung
27	chr15:74320200-74328800	Strong transcription	Fetal Stomach	stomach
28	chr15:74321200-74329600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:74321400-74330000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:74322800-74336600	Strong transcription	Primary B cells from cord blood	blood
31	chr15:74323400-74332400	Strong transcription	Thymus	Thymus
32	chr15:74323600-74328800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:74323600-74329000	Strong transcription	Fetal Intestine Small	intestine
34	chr15:74323600-74330600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr15:74323800-74328200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr15:74323800-74329000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:74323800-74329400	Strong transcription	Fetal Intestine Large	intestine
38	chr15:74323800-74329800	Strong transcription	HSMM	muscle
39	chr15:74323800-74330400	Strong transcription	Dnd41	blood
40	chr15:74323800-74330800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:74323800-74330800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:74324000-74328800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr15:74324200-74328800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:74324400-74329200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:74324400-74329200	Strong transcription	Fetal Thymus	thymus
46	chr15:74324400-74329800	Strong transcription	Ovary	ovary
47	chr15:74324400-74330000	Strong transcription	Colonic Mucosa	Colon
48	chr15:74324600-74330600	Strong transcription	Primary B cells from peripheral blood	blood
49	chr15:74324800-74328600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:74324800-74328800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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