Variant report

Variant	rs7177963
Chromosome Location	chr15:35185063-35185064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11853821	0.94[EUR][1000 genomes]
rs16959918	0.82[AMR][1000 genomes]
rs16960120	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16960127	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16960140	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17818182	0.82[AFR][1000 genomes]
rs6495719	0.85[AFR][1000 genomes]
rs7177902	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs732582	0.87[AMR][1000 genomes]
rs8032351	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8039183	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs975985	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35142600-35185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:35145200-35198200	Weak transcription	Colonic Mucosa	Colon
4	chr15:35145800-35185400	Weak transcription	Psoas Muscle	Psoas
5	chr15:35146600-35185200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:35146800-35185200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:35146800-35185200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr15:35148200-35185400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:35150400-35185200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:35153800-35185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:35154000-35185200	Weak transcription	Gastric	stomach
12	chr15:35154000-35185600	Weak transcription	Fetal Brain Male	brain
13	chr15:35157600-35185200	Weak transcription	Aorta	Aorta
14	chr15:35157600-35185200	Weak transcription	Esophagus	oesophagus
15	chr15:35157800-35185200	Weak transcription	Spleen	Spleen
16	chr15:35161800-35185200	Weak transcription	Brain Angular Gyrus	brain
17	chr15:35161800-35185200	Weak transcription	Right Ventricle	heart
18	chr15:35165000-35185400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:35167400-35185200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:35167400-35185200	Weak transcription	Lung	lung
21	chr15:35169400-35185200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:35170200-35185200	Strong transcription	Liver	Liver
23	chr15:35170600-35185200	Weak transcription	Pancreas	Pancrea
24	chr15:35171000-35186600	Strong transcription	Adipose Nuclei	Adipose
25	chr15:35171400-35185600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr15:35173200-35189000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:35175600-35185200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:35176200-35185200	Weak transcription	Small Intestine	intestine
29	chr15:35176200-35195000	Weak transcription	Brain Substantia Nigra	brain
30	chr15:35177000-35185200	Weak transcription	Ovary	ovary
31	chr15:35177000-35185200	Weak transcription	Thymus	Thymus
32	chr15:35179400-35185200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:35180200-35185400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:35180400-35185200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:35180800-35185200	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:35180800-35185200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:35180800-35185200	Weak transcription	Fetal Thymus	thymus
38	chr15:35181000-35185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:35181000-35185200	Weak transcription	Fetal Intestine Small	intestine
40	chr15:35181200-35185200	Weak transcription	Fetal Stomach	stomach
41	chr15:35181200-35185200	Weak transcription	Left Ventricle	heart
42	chr15:35181800-35186000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
43	chr15:35182000-35185200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:35182000-35190800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:35182200-35185200	Strong transcription	NH-A	brain
46	chr15:35183000-35185200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:35183000-35185400	Weak transcription	Hela-S3	cervix
48	chr15:35183000-35185800	Strong transcription	Rectal Smooth Muscle	rectum
49	chr15:35183200-35185200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:35184200-35185200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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