Variant report

Variant	rs8039183
Chromosome Location	chr15:35259376-35259377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:35256436..35258004-chr15:35259347..35262190,2	MCF-7	breast:
2	chr15:35252626..35258121-chr15:35259367..35263228,9	K562	blood:
3	chr15:35255428..35258097-chr15:35259367..35262801,3	K562	blood:
4	chr15:35258173..35260115-chr15:35260348..35263178,2	K562	blood:

Variant related genes	Relation type
ENSG00000021776	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11853821	0.88[EUR][1000 genomes]
rs12441204	1.00[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs16959918	0.85[CEU][hapmap]
rs16960120	0.90[EUR][1000 genomes]
rs16960127	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16960140	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6495719	1.00[ASW][hapmap];0.85[CEU][hapmap]
rs7174356	0.85[CEU][hapmap]
rs7177902	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7177963	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs732582	0.82[AMR][1000 genomes]
rs8032351	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs975985	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
2	chr15:35207000-35259400	Weak transcription	Small Intestine	intestine
3	chr15:35220600-35260200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:35221200-35260800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:35223400-35260600	Weak transcription	Fetal Heart	heart
6	chr15:35229400-35261000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:35232200-35260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:35233200-35259600	Weak transcription	Brain Angular Gyrus	brain
9	chr15:35235000-35260200	Weak transcription	Stomach Mucosa	stomach
10	chr15:35235000-35260800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:35235200-35260800	Weak transcription	Fetal Brain Female	brain
12	chr15:35235400-35259400	Weak transcription	Gastric	stomach
13	chr15:35236600-35260800	Weak transcription	Fetal Kidney	kidney
14	chr15:35240000-35261000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:35240600-35260600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:35240600-35260800	Weak transcription	Brain Anterior Caudate	brain
17	chr15:35243200-35261200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr15:35244600-35259400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:35244600-35259600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:35244600-35260800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:35244800-35260400	Weak transcription	HMEC	breast
22	chr15:35244800-35260800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:35244800-35260800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:35245000-35260800	Weak transcription	NHDF-Ad	bronchial
25	chr15:35248000-35259400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:35248400-35260600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:35248400-35260800	Weak transcription	Osteobl	bone
28	chr15:35248800-35259800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:35248800-35260200	Weak transcription	Pancreas	Pancrea
30	chr15:35249400-35259400	Weak transcription	Right Atrium	heart
31	chr15:35250200-35259800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:35251400-35259800	Strong transcription	Primary B cells from cord blood	blood
33	chr15:35252000-35259400	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:35252200-35259600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:35252200-35259600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:35252200-35259600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:35252200-35261000	Weak transcription	Aorta	Aorta
38	chr15:35252400-35260000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:35252400-35260200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr15:35252400-35260600	Weak transcription	Colonic Mucosa	Colon
41	chr15:35252400-35260600	Weak transcription	NHEK	skin
42	chr15:35252400-35260600	Weak transcription	NHLF	lung
43	chr15:35252600-35259800	Weak transcription	Fetal Brain Male	brain
44	chr15:35253000-35259400	Weak transcription	Fetal Thymus	thymus
45	chr15:35254600-35259400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:35254600-35260600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:35254600-35260800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr15:35254800-35259800	Weak transcription	Fetal Lung	lung
49	chr15:35254800-35260000	Weak transcription	Lung	lung
50	chr15:35254800-35260200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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