Variant report

Variant	rs7178110
Chromosome Location	chr15:41552163-41552164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41546898..41548900-chr15:41550634..41552926,2	K562	blood:

Variant related genes	Relation type
ENSG00000187446	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56687496	1.00[EUR][1000 genomes]
rs59073406	1.00[EUR][1000 genomes]
rs59659337	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61602493	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9745301	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41554800	Weak transcription	Fetal Thymus	thymus
2	chr15:41524200-41555800	Weak transcription	Aorta	Aorta
3	chr15:41524200-41563800	Weak transcription	Small Intestine	intestine
4	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:41524400-41555800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:41524800-41563800	Weak transcription	Esophagus	oesophagus
7	chr15:41525200-41554200	Weak transcription	Fetal Brain Female	brain
8	chr15:41525200-41556400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:41525400-41556200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:41525400-41556800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:41525800-41554800	Weak transcription	Dnd41	blood
13	chr15:41525800-41575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:41526000-41554800	Weak transcription	Brain Angular Gyrus	brain
15	chr15:41526200-41554800	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:41533200-41552400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:41533800-41554600	Weak transcription	Brain Anterior Caudate	brain
18	chr15:41533800-41555000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:41534000-41555200	Weak transcription	Brain Germinal Matrix	brain
20	chr15:41534200-41555200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:41534200-41556400	Weak transcription	Spleen	Spleen
22	chr15:41536600-41573600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:41536800-41555000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr15:41536800-41555200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:41537200-41553000	Weak transcription	Colonic Mucosa	Colon
26	chr15:41537200-41555000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:41537400-41555000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:41537400-41570800	Weak transcription	Ovary	ovary
29	chr15:41537600-41562800	Weak transcription	Lung	lung
30	chr15:41537800-41554600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:41538200-41555000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:41539400-41555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:41539400-41555800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:41541600-41554800	Weak transcription	Thymus	Thymus
35	chr15:41542600-41554800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:41542600-41555000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:41542600-41555000	Weak transcription	NHLF	lung
38	chr15:41542800-41554800	Weak transcription	NH-A	brain
39	chr15:41542800-41555000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:41542800-41572000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:41543000-41575200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:41544600-41553400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:41544800-41552200	Weak transcription	Fetal Stomach	stomach
44	chr15:41545000-41554400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr15:41545000-41554600	Weak transcription	Left Ventricle	heart
46	chr15:41545000-41571400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:41547000-41554400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:41547800-41553600	Enhancers	HepG2	liver
49	chr15:41548400-41552400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:41549000-41552400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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