Variant report

Variant	rs7178919
Chromosome Location	chr15:73413410-73413411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7162951	1.00[AMR][1000 genomes]
rs7167434	1.00[AMR][1000 genomes]
rs8039262	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73388800-73431200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:73393200-73422400	Weak transcription	Aorta	Aorta
3	chr15:73394200-73414800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:73394400-73415000	Weak transcription	Fetal Stomach	stomach
5	chr15:73396400-73444600	Weak transcription	Psoas Muscle	Psoas
6	chr15:73398400-73415000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:73400400-73434200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:73401200-73414600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:73401200-73414800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:73401200-73423000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:73401200-73428200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:73401400-73419600	Weak transcription	Brain Angular Gyrus	brain
13	chr15:73401400-73422400	Weak transcription	Pancreas	Pancrea
14	chr15:73401400-73422800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:73401400-73480200	Weak transcription	Right Ventricle	heart
16	chr15:73401600-73413600	Weak transcription	Brain Substantia Nigra	brain
17	chr15:73403000-73443400	Weak transcription	Fetal Kidney	kidney
18	chr15:73403200-73414800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:73403600-73414800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:73403600-73415600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:73404200-73414800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:73404200-73425800	Weak transcription	Small Intestine	intestine
23	chr15:73404200-73442600	Weak transcription	Left Ventricle	heart
24	chr15:73405800-73415000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:73406600-73422400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:73406600-73423200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:73406600-73425200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:73406600-73432600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr15:73406800-73414800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:73406800-73418600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr15:73406800-73419600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:73407000-73414800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:73407400-73431600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:73407600-73414800	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:73408000-73443400	Weak transcription	Adipose Nuclei	Adipose
36	chr15:73408800-73424600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:73409200-73422800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:73409200-73429200	Weak transcription	Esophagus	oesophagus
39	chr15:73409600-73414800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:73409600-73414800	Weak transcription	Ovary	ovary
41	chr15:73409800-73414600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:73409800-73415000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:73410000-73418800	Weak transcription	Brain Anterior Caudate	brain
44	chr15:73410400-73414800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:73410600-73434600	Weak transcription	Liver	Liver
46	chr15:73410800-73431400	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:73411400-73413600	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:73412000-73413800	Enhancers	Fetal Intestine Large	intestine
49	chr15:73412600-73417600	Weak transcription	Brain Germinal Matrix	brain
50	chr15:73413200-73413600	Weak transcription	Brain Inferior Temporal Lobe	brain

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