Variant report

Variant	rs7179020
Chromosome Location	chr15:39914545-39914546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39889048..39893948-chr15:39913567..39917542,6	MCF-7	breast:
2	chr15:39872530..39878181-chr15:39914348..39917855,8	MCF-7	breast:
3	chr15:39887137..39895767-chr15:39912868..39924962,20	MCF-7	breast:
4	chr15:39913257..39915951-chr15:39916082..39918090,3	K562	blood:
5	chr15:39913171..39923947-chr15:39954798..39966806,32	MCF-7	breast:
6	chr15:39913193..39915951-chr15:39916034..39918090,4	K562	blood:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction
ENSG00000150667	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10520139	1.00[ASN][1000 genomes]
rs16969468	1.00[ASN][1000 genomes]
rs16969544	1.00[ASN][1000 genomes]
rs16969546	1.00[ASN][1000 genomes]
rs16969550	1.00[ASN][1000 genomes]
rs16969552	1.00[ASN][1000 genomes]
rs16969553	1.00[ASN][1000 genomes]
rs16969554	1.00[ASN][1000 genomes]
rs16969556	1.00[ASN][1000 genomes]
rs16969559	1.00[ASN][1000 genomes]
rs16969560	1.00[ASN][1000 genomes]
rs16969563	1.00[ASN][1000 genomes]
rs57588844	1.00[ASN][1000 genomes]
rs58098811	1.00[ASN][1000 genomes]
rs58813139	1.00[ASN][1000 genomes]
rs61614874	1.00[ASN][1000 genomes]
rs7168558	1.00[ASN][1000 genomes]
rs7171103	1.00[ASN][1000 genomes]
rs73393229	1.00[ASN][1000 genomes]
rs73393230	1.00[ASN][1000 genomes]
rs73393232	1.00[ASN][1000 genomes]
rs7494926	1.00[ASN][1000 genomes]
rs7498087	1.00[ASN][1000 genomes]
rs8028707	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1048628	chr15:39877498-39940104	Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1502	chr15:39884314-39928968	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39906600-39916000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:39910600-39915400	Weak transcription	A549	lung
3	chr15:39910800-39916200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:39910800-39917400	Weak transcription	Small Intestine	intestine
5	chr15:39911000-39916000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:39911000-39916200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:39911000-39916200	Weak transcription	Left Ventricle	heart
8	chr15:39911000-39916400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:39911400-39916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:39912000-39916000	Weak transcription	HMEC	breast
11	chr15:39912800-39916000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:39913200-39924000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:39913400-39914600	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr15:39913400-39915200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:39913400-39915400	Enhancers	Colon Smooth Muscle	Colon
16	chr15:39913400-39918200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:39913400-39921000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:39913400-39922400	Enhancers	Fetal Intestine Large	intestine
19	chr15:39913400-39923800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:39913600-39914600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:39913600-39914600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:39913600-39914600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:39913600-39916000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr15:39913800-39914800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr15:39913800-39914800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:39913800-39915800	Weak transcription	HUVEC	blood vessel
27	chr15:39913800-39916400	Weak transcription	NHEK	skin
28	chr15:39913800-39916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:39913800-39917200	Weak transcription	Fetal Muscle Leg	muscle
30	chr15:39914000-39914600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:39914000-39922800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:39914200-39914600	Enhancers	Fetal Brain Female	brain
33	chr15:39914200-39916000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:39914200-39916600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:39914200-39922600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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