Variant report

Variant	rs16969546
Chromosome Location	chr15:39964797-39964798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39913171..39923947-chr15:39954798..39966806,32	MCF-7	breast:
2	chr15:39960868..39962395-chr15:39964357..39966165,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10520139	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1551946	1.00[CHD][hapmap]
rs16952161	1.00[EUR][1000 genomes]
rs16969215	1.00[EUR][1000 genomes]
rs16969280	1.00[EUR][1000 genomes]
rs16969283	1.00[EUR][1000 genomes]
rs16969285	1.00[EUR][1000 genomes]
rs16969287	1.00[EUR][1000 genomes]
rs16969291	1.00[EUR][1000 genomes]
rs16969292	1.00[EUR][1000 genomes]
rs16969296	1.00[EUR][1000 genomes]
rs16969300	1.00[EUR][1000 genomes]
rs16969305	1.00[EUR][1000 genomes]
rs16969309	1.00[EUR][1000 genomes]
rs16969312	1.00[EUR][1000 genomes]
rs16969314	1.00[EUR][1000 genomes]
rs16969468	1.00[ASN][1000 genomes]
rs16969544	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969550	1.00[ASN][1000 genomes]
rs16969552	1.00[ASN][1000 genomes]
rs16969553	1.00[ASN][1000 genomes]
rs16969554	1.00[ASN][1000 genomes]
rs16969556	1.00[ASN][1000 genomes]
rs16969559	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16969560	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16969563	1.00[ASN][1000 genomes]
rs55856565	1.00[EUR][1000 genomes]
rs57158008	1.00[EUR][1000 genomes]
rs57522022	1.00[EUR][1000 genomes]
rs57588844	1.00[ASN][1000 genomes]
rs58092559	1.00[EUR][1000 genomes]
rs58098811	1.00[ASN][1000 genomes]
rs58757397	1.00[EUR][1000 genomes]
rs58813139	1.00[ASN][1000 genomes]
rs59258887	1.00[EUR][1000 genomes]
rs59831722	1.00[EUR][1000 genomes]
rs60652586	1.00[EUR][1000 genomes]
rs61614874	1.00[ASN][1000 genomes]
rs61694079	1.00[EUR][1000 genomes]
rs6492905	1.00[CHD][hapmap]
rs7162311	1.00[EUR][1000 genomes]
rs7168558	1.00[ASN][1000 genomes]
rs7171103	1.00[ASN][1000 genomes]
rs7173641	1.00[EUR][1000 genomes]
rs7179020	1.00[ASN][1000 genomes]
rs7181929	1.00[EUR][1000 genomes]
rs7183539	0.81[MKK][hapmap]
rs73385171	1.00[EUR][1000 genomes]
rs73385174	1.00[EUR][1000 genomes]
rs73393229	1.00[ASN][1000 genomes]
rs73393230	1.00[ASN][1000 genomes]
rs73393232	1.00[ASN][1000 genomes]
rs73395254	1.00[EUR][1000 genomes]
rs73395265	1.00[EUR][1000 genomes]
rs74008657	1.00[EUR][1000 genomes]
rs74008679	1.00[EUR][1000 genomes]
rs74008682	1.00[EUR][1000 genomes]
rs7494926	1.00[ASN][1000 genomes]
rs7498087	1.00[ASN][1000 genomes]
rs8024038	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs8028707	1.00[ASN][1000 genomes]
rs8036035	1.00[EUR][1000 genomes]
rs8040050	1.00[EUR][1000 genomes]
rs8040902	1.00[EUR][1000 genomes]
rs8041146	1.00[EUR][1000 genomes]
rs8041613	1.00[EUR][1000 genomes]
rs9673056	1.00[EUR][1000 genomes]
rs9806602	1.00[EUR][1000 genomes]
rs9806608	1.00[EUR][1000 genomes]
rs9806620	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39960200-39972600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:39964400-39964800	Enhancers	HSMM	muscle
3	chr15:39964600-39972600	Weak transcription	HSMMtube	muscle
4	chr15:39964600-39974000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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