Variant report

Variant	rs8036035
Chromosome Location	chr15:40026434-40026435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40022385..40024167-chr15:40025741..40027363,2	K562	blood:
2	chr15:40021204..40023885-chr15:40025697..40027241,2	K562	blood:
3	chr15:40025203..40027803-chr15:40038050..40039885,2	K562	blood:
4	chr15:40026171..40028799-chr15:40029635..40031982,2	K562	blood:

Variant related genes	Relation type
ENSG00000150667	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10083552	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10520141	1.00[JPT][hapmap]
rs10520143	1.00[JPT][hapmap]
rs10520145	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10520146	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10520148	0.86[ASN][1000 genomes]
rs10520152	1.00[JPT][hapmap]
rs12324682	1.00[JPT][hapmap]
rs16952161	1.00[EUR][1000 genomes]
rs16969280	1.00[EUR][1000 genomes]
rs16969283	1.00[EUR][1000 genomes]
rs16969285	1.00[EUR][1000 genomes]
rs16969287	1.00[EUR][1000 genomes]
rs16969291	1.00[EUR][1000 genomes]
rs16969292	1.00[EUR][1000 genomes]
rs16969296	1.00[EUR][1000 genomes]
rs16969300	1.00[EUR][1000 genomes]
rs16969305	1.00[EUR][1000 genomes]
rs16969309	1.00[EUR][1000 genomes]
rs16969312	1.00[EUR][1000 genomes]
rs16969314	1.00[EUR][1000 genomes]
rs16969335	1.00[JPT][hapmap]
rs16969338	1.00[JPT][hapmap]
rs16969352	1.00[JPT][hapmap]
rs16969484	1.00[ASN][1000 genomes]
rs16969487	1.00[JPT][hapmap]
rs16969544	1.00[EUR][1000 genomes]
rs16969546	1.00[EUR][1000 genomes]
rs16969547	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16969573	1.00[ASN][1000 genomes]
rs16969678	1.00[ASN][1000 genomes]
rs17706083	1.00[JPT][hapmap]
rs1994380	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2129457	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2411316	1.00[JPT][hapmap]
rs2618165	1.00[JPT][hapmap]
rs28735552	0.86[ASN][1000 genomes]
rs28785006	0.86[ASN][1000 genomes]
rs34878675	0.86[ASN][1000 genomes]
rs4085744	0.86[ASN][1000 genomes]
rs41376748	0.83[ASN][1000 genomes]
rs41515347	0.83[ASN][1000 genomes]
rs4291886	0.83[ASN][1000 genomes]
rs4322636	1.00[ASN][1000 genomes]
rs4415979	1.00[JPT][hapmap]
rs4503768	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs55856565	1.00[EUR][1000 genomes]
rs57158008	1.00[EUR][1000 genomes]
rs57522022	1.00[EUR][1000 genomes]
rs58092559	1.00[EUR][1000 genomes]
rs58757397	1.00[EUR][1000 genomes]
rs59146042	1.00[ASN][1000 genomes]
rs59258887	1.00[EUR][1000 genomes]
rs59831722	1.00[EUR][1000 genomes]
rs60228643	0.86[ASN][1000 genomes]
rs61040173	0.83[ASN][1000 genomes]
rs61694079	1.00[EUR][1000 genomes]
rs7162311	1.00[EUR][1000 genomes]
rs7173641	1.00[EUR][1000 genomes]
rs7181929	1.00[EUR][1000 genomes]
rs72727029	0.86[ASN][1000 genomes]
rs73384353	1.00[EUR][1000 genomes]
rs73395254	1.00[EUR][1000 genomes]
rs73395265	1.00[EUR][1000 genomes]
rs74008657	1.00[EUR][1000 genomes]
rs74008679	1.00[EUR][1000 genomes]
rs74008682	1.00[EUR][1000 genomes]
rs8040050	1.00[EUR][1000 genomes]
rs8040902	1.00[EUR][1000 genomes]
rs8041146	1.00[EUR][1000 genomes]
rs8041613	1.00[EUR][1000 genomes]
rs880270	1.00[JPT][hapmap]
rs9806602	1.00[EUR][1000 genomes]
rs9806608	1.00[EUR][1000 genomes]
rs9806620	1.00[EUR][1000 genomes]
rs9972350	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40021800-40038000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40023200-40027000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:40023400-40028200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:40023400-40028400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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