Variant report

Variant	rs58092559
Chromosome Location	chr15:39851888-39851889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39845301..39848272-chr15:39850823..39852507,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs16952161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969165	1.00[AMR][1000 genomes]
rs16969168	1.00[AMR][1000 genomes]
rs16969215	1.00[EUR][1000 genomes]
rs16969280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969292	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969544	1.00[EUR][1000 genomes]
rs16969546	1.00[EUR][1000 genomes]
rs55856565	1.00[EUR][1000 genomes]
rs57158008	1.00[EUR][1000 genomes]
rs57522022	1.00[EUR][1000 genomes]
rs58757397	1.00[EUR][1000 genomes]
rs59258887	1.00[EUR][1000 genomes]
rs59831722	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60652586	1.00[EUR][1000 genomes]
rs61018982	1.00[AMR][1000 genomes]
rs61694079	1.00[EUR][1000 genomes]
rs7162311	1.00[EUR][1000 genomes]
rs7173641	1.00[EUR][1000 genomes]
rs7181929	1.00[EUR][1000 genomes]
rs73383183	1.00[AMR][1000 genomes]
rs73383185	1.00[AMR][1000 genomes]
rs73385171	1.00[EUR][1000 genomes]
rs73385174	1.00[EUR][1000 genomes]
rs73395254	1.00[EUR][1000 genomes]
rs73395265	1.00[EUR][1000 genomes]
rs73401215	1.00[AMR][1000 genomes]
rs73401224	1.00[AMR][1000 genomes]
rs74008657	1.00[EUR][1000 genomes]
rs74008679	1.00[EUR][1000 genomes]
rs74008682	1.00[EUR][1000 genomes]
rs8036035	1.00[EUR][1000 genomes]
rs8039642	1.00[AMR][1000 genomes]
rs8040050	1.00[EUR][1000 genomes]
rs8040902	1.00[EUR][1000 genomes]
rs8041146	1.00[EUR][1000 genomes]
rs8041613	1.00[EUR][1000 genomes]
rs9673056	1.00[EUR][1000 genomes]
rs9806602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806608	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39851000-39871800	Weak transcription	Pancreas	Pancrea
2	chr15:39851200-39856800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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