Variant report

Variant	rs8039642
Chromosome Location	chr15:39810768-39810769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16952161	1.00[AMR][1000 genomes]
rs16969165	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969168	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969280	1.00[AMR][1000 genomes]
rs16969283	1.00[AMR][1000 genomes]
rs16969285	1.00[AMR][1000 genomes]
rs16969287	1.00[AMR][1000 genomes]
rs16969291	1.00[AMR][1000 genomes]
rs16969292	1.00[AMR][1000 genomes]
rs16969296	1.00[AMR][1000 genomes]
rs16969300	1.00[AMR][1000 genomes]
rs16969305	1.00[AMR][1000 genomes]
rs16969309	1.00[AMR][1000 genomes]
rs16969312	1.00[AMR][1000 genomes]
rs16969314	1.00[AMR][1000 genomes]
rs58092559	1.00[AMR][1000 genomes]
rs59831722	1.00[AMR][1000 genomes]
rs61018982	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401215	1.00[AMR][1000 genomes]
rs73401224	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806602	1.00[AMR][1000 genomes]
rs9806608	1.00[AMR][1000 genomes]
rs9806620	1.00[AMR][1000 genomes]
rs9806627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39804200-39811000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:39810400-39810800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:39810600-39811200	Enhancers	K562	blood

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