Variant report

Variant	rs16969168
Chromosome Location	chr15:39809810-39809811
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr15:39809221-39810034	K562	blood:	n/a	n/a
2	ZNF274	chr15:39809326-39810199	K562	blood:	n/a	n/a
3	TEAD4	chr15:39809186-39809928	K562	blood:	n/a	n/a
4	GATA2	chr15:39809182-39809952	K562	blood:	n/a	chr15:39809767-39809774 chr15:39809765-39809775 chr15:39809765-39809774 chr15:39809501-39809517 chr15:39809767-39809777
5	NR2F2	chr15:39809190-39809891	K562	blood:	n/a	n/a
6	RCOR1	chr15:39809253-39809986	K562	blood:	n/a	n/a
7	UBTF	chr15:39809352-39809948	K562	blood:	n/a	n/a
8	IRF1	chr15:39809194-39809910	K562	blood:	n/a	chr15:39809643-39809657
9	TAL1	chr15:39809178-39810160	K562	blood:	n/a	chr15:39809505-39809523
10	TEAD4	chr15:39809142-39809955	K562	blood:	n/a	n/a
11	TBL1XR1	chr15:39809311-39809810	K562	blood:	n/a	n/a
12	CCNT2	chr15:39809293-39809946	K562	blood:	n/a	n/a
13	ARID3A	chr15:39809284-39809896	K562	blood:	n/a	n/a
14	ATF1	chr15:39809277-39809938	K562	blood:	n/a	n/a
15	GATA1	chr15:39809176-39809879	PBDE	blood:	n/a	chr15:39809767-39809774 chr15:39809765-39809775 chr15:39809765-39809774 chr15:39809501-39809517 chr15:39809767-39809777
16	GATA1	chr15:39808485-39810333	K562	blood:	n/a	chr15:39809767-39809774 chr15:39809765-39809775 chr15:39809765-39809774 chr15:39809501-39809517 chr15:39809767-39809777
17	JUND	chr15:39809200-39809834	K562	blood:	n/a	n/a
18	GATA2	chr15:39809303-39809902	K562	blood:	n/a	chr15:39809767-39809774 chr15:39809765-39809775 chr15:39809765-39809774 chr15:39809501-39809517 chr15:39809767-39809777
19	MAFF	chr15:39809313-39809986	K562	blood:	n/a	n/a
20	RCOR1	chr15:39809321-39809884	K562	blood:	n/a	n/a
21	MYC	chr15:39809284-39809891	K562	blood:	n/a	n/a
22	EP300	chr15:39809229-39810029	K562	blood:	n/a	n/a
23	EP300	chr15:39809219-39809953	K562	blood:	n/a	n/a
24	TBP	chr15:39809420-39809972	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39807941..39810213-chr15:39820034..39822568,2	K562	blood:

Variant related genes	Relation type
ENSG00000259390	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16952161	1.00[AMR][1000 genomes]
rs16969165	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969280	1.00[AMR][1000 genomes]
rs16969283	1.00[AMR][1000 genomes]
rs16969285	1.00[AMR][1000 genomes]
rs16969287	1.00[AMR][1000 genomes]
rs16969291	1.00[AMR][1000 genomes]
rs16969292	1.00[AMR][1000 genomes]
rs16969296	1.00[AMR][1000 genomes]
rs16969300	1.00[AMR][1000 genomes]
rs16969305	1.00[AMR][1000 genomes]
rs16969309	1.00[AMR][1000 genomes]
rs16969312	1.00[AMR][1000 genomes]
rs16969314	1.00[AMR][1000 genomes]
rs58092559	1.00[AMR][1000 genomes]
rs59831722	1.00[AMR][1000 genomes]
rs61018982	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401215	1.00[AMR][1000 genomes]
rs73401224	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039642	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806602	1.00[AMR][1000 genomes]
rs9806608	1.00[AMR][1000 genomes]
rs9806620	1.00[AMR][1000 genomes]
rs9806627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39804200-39811000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:39808400-39810400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:39809600-39810000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:39809600-39810600	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links