Variant report

Variant	rs73401215
Chromosome Location	chr15:39795264-39795265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39788869..39791943-chr15:39792558..39796121,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16952161	1.00[AMR][1000 genomes]
rs16969165	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969168	1.00[AMR][1000 genomes]
rs16969280	1.00[AMR][1000 genomes]
rs16969283	1.00[AMR][1000 genomes]
rs16969285	1.00[AMR][1000 genomes]
rs16969287	1.00[AMR][1000 genomes]
rs16969291	1.00[AMR][1000 genomes]
rs16969292	1.00[AMR][1000 genomes]
rs16969296	1.00[AMR][1000 genomes]
rs16969300	1.00[AMR][1000 genomes]
rs16969305	1.00[AMR][1000 genomes]
rs16969309	1.00[AMR][1000 genomes]
rs16969312	1.00[AMR][1000 genomes]
rs16969314	1.00[AMR][1000 genomes]
rs58092559	1.00[AMR][1000 genomes]
rs59831722	1.00[AMR][1000 genomes]
rs61018982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383183	1.00[AMR][1000 genomes]
rs73383185	1.00[AMR][1000 genomes]
rs73401224	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039642	1.00[AMR][1000 genomes]
rs9806602	1.00[AMR][1000 genomes]
rs9806608	1.00[AMR][1000 genomes]
rs9806620	1.00[AMR][1000 genomes]
rs9806627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39788000-39795400	Enhancers	Fetal Stomach	stomach
2	chr15:39788200-39795400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:39789000-39800800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:39789000-39803200	Weak transcription	Left Ventricle	heart
5	chr15:39791000-39795400	Weak transcription	Fetal Thymus	thymus
6	chr15:39791600-39796600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:39791600-39803200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:39791600-39803400	Weak transcription	Fetal Lung	lung
9	chr15:39792200-39803600	Weak transcription	Ovary	ovary
10	chr15:39792400-39796400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:39793200-39795600	Enhancers	NHEK	skin
12	chr15:39793400-39795400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:39793400-39795600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:39793600-39795400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:39793600-39795600	Enhancers	HMEC	breast
16	chr15:39793800-39795400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:39793800-39802200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:39793800-39803200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:39793800-39803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:39794000-39795800	Weak transcription	NHDF-Ad	bronchial
21	chr15:39794000-39796000	Weak transcription	NHLF	lung
22	chr15:39794000-39796600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:39794000-39796600	Weak transcription	NH-A	brain
24	chr15:39794000-39797600	Enhancers	Colon Smooth Muscle	Colon
25	chr15:39794000-39800600	Weak transcription	HSMM	muscle
26	chr15:39794400-39795400	Enhancers	K562	blood
27	chr15:39794400-39802800	Weak transcription	Fetal Heart	heart
28	chr15:39794600-39795600	Weak transcription	Right Atrium	heart
29	chr15:39794600-39796600	Weak transcription	Lung	lung
30	chr15:39794600-39801000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:39795000-39795400	Enhancers	Fetal Intestine Large	intestine
32	chr15:39795200-39796200	Weak transcription	Osteobl	bone
33	chr15:39795200-39796400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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