Variant report

Variant	rs7179045
Chromosome Location	chr15:52142051-52142052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52141984..52144818-chr15:52148015..52151363,3	MCF-7	breast:
2	chr15:52121713..52124493-chr15:52139618..52143592,4	MCF-7	breast:
3	chr15:52134932..52136622-chr15:52140952..52142810,2	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1824083	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2652596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs543024	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs562858	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs689842	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs690433	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52130000-52155000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:52130800-52155200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:52133000-52143600	Enhancers	NHDF-Ad	bronchial
4	chr15:52133000-52146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:52135800-52146200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:52135800-52155000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:52136000-52145800	Weak transcription	Liver	Liver
8	chr15:52136000-52155200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:52136200-52155000	Weak transcription	Aorta	Aorta
10	chr15:52136600-52153400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:52137400-52147400	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:52137600-52145600	Weak transcription	HepG2	liver
13	chr15:52137800-52155000	Weak transcription	Fetal Intestine Large	intestine
14	chr15:52138000-52153400	Weak transcription	Esophagus	oesophagus
15	chr15:52138000-52155000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:52138600-52155000	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:52139000-52146000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:52139000-52153400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:52139200-52147600	Weak transcription	Brain Anterior Caudate	brain
20	chr15:52139200-52156200	Weak transcription	Fetal Intestine Small	intestine
21	chr15:52139400-52142400	Weak transcription	Spleen	Spleen
22	chr15:52139400-52142600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:52139400-52142800	Weak transcription	K562	blood
24	chr15:52139400-52143000	Weak transcription	Lung	lung
25	chr15:52139400-52144800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:52139400-52145000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr15:52139400-52145400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:52139400-52147200	Weak transcription	GM12878-XiMat	blood
29	chr15:52139400-52147400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:52139400-52148200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:52139400-52151600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:52139400-52152000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:52139400-52156600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:52139600-52143400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:52139600-52145400	Enhancers	Hela-S3	cervix
36	chr15:52139600-52151600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:52139600-52151600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:52139600-52152000	Weak transcription	Primary B cells from cord blood	blood
39	chr15:52139600-52154800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:52139800-52153400	Weak transcription	Fetal Thymus	thymus
41	chr15:52139800-52153600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:52140000-52142400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:52140000-52144000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:52140000-52145000	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr15:52140000-52146200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:52140000-52151600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:52140000-52155000	Weak transcription	NH-A	brain
48	chr15:52140200-52148800	Weak transcription	Primary T cells from cord blood	blood
49	chr15:52140200-52155400	Weak transcription	HSMMtube	muscle
50	chr15:52140400-52155000	Weak transcription	HSMM	muscle

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