Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:52028100..52031772-chr15:52032552..52038946,7	MCF-7	breast:
2	chr15:52035146..52037140-chr15:52056300..52058053,2	MCF-7	breast:
3	chr15:52026416..52029376-chr15:52033345..52036135,2	K562	blood:
4	chr15:52033609..52037215-chr15:52040115..52042966,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1824083	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2162224	0.84[YRI][hapmap]
rs2436663	0.81[YRI][hapmap]
rs2436664	0.81[YRI][hapmap]
rs2554319	0.81[YRI][hapmap]
rs2554324	0.81[YRI][hapmap]
rs2554329	0.83[YRI][hapmap]
rs2554331	0.93[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554333	0.81[YRI][hapmap]
rs2554352	0.81[YRI][hapmap]
rs2554356	0.81[YRI][hapmap]
rs2554357	0.87[YRI][hapmap]
rs2570244	0.81[YRI][hapmap]
rs2570245	0.81[YRI][hapmap]
rs2570246	0.81[YRI][hapmap]
rs2570256	0.81[YRI][hapmap]
rs2570257	0.81[YRI][hapmap]
rs2570267	0.81[YRI][hapmap]
rs2593171	0.81[YRI][hapmap]
rs2593175	0.81[YRI][hapmap]
rs2623246	0.81[YRI][hapmap]
rs2623248	0.81[YRI][hapmap]
rs2623264	0.80[YRI][hapmap]
rs2623269	0.81[YRI][hapmap]
rs2623274	0.81[YRI][hapmap]
rs2623277	0.81[YRI][hapmap]
rs2623290	0.84[YRI][hapmap]
rs2652596	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs543024	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs562858	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs690433	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7179045	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52043200	Weak transcription	Gastric	stomach
2	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52032400-52040800	Weak transcription	K562	blood

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