Variant report

Variant	rs7180936
Chromosome Location	chr15:58803508-58803509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58800669..58805424-chr15:58807712..58810883,4	K562	blood:
2	chr15:58801519..58805506-chr15:58811166..58813986,3	K562	blood:

Variant related genes	Relation type
ENSG00000259476	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11071384	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592017	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12898984	1.00[YRI][hapmap]
rs12900448	1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1823697	1.00[YRI][hapmap]
rs1823698	1.00[YRI][hapmap]
rs1839929	1.00[YRI][hapmap]
rs1869145	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1968688	1.00[YRI][hapmap]
rs1968690	1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1979177	0.93[EUR][1000 genomes]
rs2034613	1.00[YRI][hapmap]
rs2414588	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2899631	1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3751543	0.81[AMR][1000 genomes]
rs4503731	1.00[YRI][hapmap]
rs4581653	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4774301	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775061	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775062	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775063	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775064	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775065	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775066	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775067	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775068	1.00[YRI][hapmap]
rs57887591	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6494016	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66849766	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7167672	1.00[YRI][hapmap]
rs7183248	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8037479	1.00[YRI][hapmap]
rs8038906	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58791400-58809400	Weak transcription	Spleen	Spleen
2	chr15:58798600-58807800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:58798600-58813200	Weak transcription	Aorta	Aorta
4	chr15:58798800-58807800	Weak transcription	Primary B cells from cord blood	blood
5	chr15:58798800-58812600	Weak transcription	Left Ventricle	heart
6	chr15:58799000-58804600	Weak transcription	Placenta	Placenta
7	chr15:58799000-58805000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:58799000-58806000	Weak transcription	Psoas Muscle	Psoas
9	chr15:58799200-58807200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:58799200-58809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:58799400-58805000	Weak transcription	Fetal Thymus	thymus
12	chr15:58799400-58807800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:58800000-58804600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:58801000-58806600	Enhancers	HSMMtube	muscle
15	chr15:58801800-58804000	Enhancers	HSMM	muscle
16	chr15:58802200-58803600	Enhancers	NHDF-Ad	bronchial
17	chr15:58802400-58803800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:58802400-58803800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:58802400-58805000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:58802600-58803600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:58802600-58803800	Enhancers	HUVEC	blood vessel
22	chr15:58802600-58803800	Enhancers	NHEK	skin
23	chr15:58802600-58805200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:58802800-58803600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:58802800-58803600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:58802800-58803800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:58802800-58803800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr15:58802800-58803800	Enhancers	Brain Substantia Nigra	brain
29	chr15:58802800-58806400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:58803000-58803600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr15:58803000-58803800	Enhancers	Gastric	stomach
32	chr15:58803200-58805000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr15:58803400-58803600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:58803400-58803800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:58803400-58803800	Enhancers	Brain Hippocampus Middle	brain
36	chr15:58803400-58803800	Enhancers	Esophagus	oesophagus
37	chr15:58803400-58803800	Enhancers	Fetal Muscle Leg	muscle
38	chr15:58803400-58804000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr15:58803400-58804200	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr15:58803400-58805600	Weak transcription	A549	lung

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