Variant report

Variant	rs7181171
Chromosome Location	chr15:32984628-32984629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11550873	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1258733	1.00[TSI][hapmap]
rs6494587	0.88[ASW][hapmap];0.87[LWK][hapmap]
rs8024160	0.82[LWK][hapmap]
rs8027230	0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs9806391	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv469587	chr15:32821940-32986579	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv482780	chr15:32821940-32986579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv568915	chr15:32965357-32994056	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:32964600-32990800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:32964800-32993800	Weak transcription	Fetal Brain Male	brain
3	chr15:32973200-32986000	Weak transcription	Brain Germinal Matrix	brain
4	chr15:32975200-32986000	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:32978800-32996400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:32980600-32991200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:32980800-32986600	Weak transcription	HSMM	muscle
8	chr15:32980800-32990600	Weak transcription	Fetal Brain Female	brain
9	chr15:32980800-32992400	Weak transcription	Stomach Mucosa	stomach
10	chr15:32980800-32993600	Weak transcription	Pancreas	Pancrea
11	chr15:32980800-32996200	Weak transcription	HSMMtube	muscle
12	chr15:32983000-32985000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:32983600-32985600	Strong transcription	NHEK	skin
14	chr15:32983800-32984800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:32983800-32985000	Strong transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:32984200-32985400	Enhancers	Duodenum Mucosa	Duodenum
17	chr15:32984200-32985800	Weak transcription	Liver	Liver
18	chr15:32984200-32993600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:32984400-32986200	Weak transcription	Brain Anterior Caudate	brain
20	chr15:32984400-32986800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:32984400-32991200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:32984400-32993400	Weak transcription	Brain Cingulate Gyrus	brain

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