Variant report

Variant	rs9806391
Chromosome Location	chr15:33009780-33009781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:33009637-33011755	U87	brain:	n/a	n/a
2	CTBP2	chr15:33009436-33011874	H1-hESC	embryonic stem cell:	n/a	n/a
3	E2F6	chr15:33009534-33009997	A549	lung:	n/a	n/a
4	TEAD4	chr15:33009741-33010159	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr15:33009720-33009870	AG04449	skin:	n/a	n/a
6	TAF1	chr15:33009726-33010039	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr15:33009535-33011795	A549	lung:	n/a	n/a
8	TBP	chr15:33009750-33010380	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr15:33007578-33017851	IMR90	lung:	n/a	n/a
10	E2F6	chr15:33009680-33011486	A549	lung:	n/a	chr15:33011175-33011190 chr15:33011104-33011116 chr15:33011100-33011115
11	JUND	chr15:33009679-33010048	H1-hESC	embryonic stem cell:	n/a	n/a
12	TEAD4	chr15:33009751-33010166	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr15:33009534-33010062	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAZ	chr15:33009340-33012500	IMR90	lung:	n/a	n/a
15	POLR2A	chr15:33009738-33011749	U87	brain:	n/a	n/a
16	E2F6	chr15:33009486-33010899	H1-hESC	embryonic stem cell:	n/a	n/a
17	MXI1	chr15:33009663-33013329	IMR90	lung:	n/a	n/a
18	E2F6	chr15:33009373-33010996	H1-hESC	embryonic stem cell:	n/a	n/a
19	CHD2	chr15:33009684-33009957	H1-hESC	embryonic stem cell:	n/a	n/a
20	SUZ12	chr15:33009144-33011978	NT2-D1	testis:	n/a	n/a
21	CHD1	chr15:33007205-33016414	IMR90	lung:	n/a	chr15:33010001-33010011 chr15:33009561-33009571
22	SIN3A	chr15:33009491-33011723	H1-hESC	embryonic stem cell:	n/a	chr15:33010657-33010666 chr15:33011623-33011631 chr15:33010996-33011009 chr15:33009639-33009652 chr15:33011149-33011162 chr15:33010674-33010683
23	RAD21	chr15:33009504-33012205	IMR90	lung:	n/a	chr15:33011533-33011547 chr15:33009596-33009610 chr15:33010670-33010684 chr15:33010657-33010671
24	POLR2A	chr15:33009689-33015806	ProgFib	skin:	n/a	n/a
25	TEAD4	chr15:33009730-33010089	ECC-1	luminal epithelium:	n/a	n/a
26	POLR2A	chr15:33009287-33010047	H1-neurons	neurons:	n/a	n/a
27	POLR2A	chr15:33009643-33010022	H1-neurons	neurons:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FMN1-1	chr15:33009471-33011208	ENSG00000259721.1

Variant related genes	Relation type
GREM1	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11550873	1.00[MEX][hapmap]
rs7181171	1.00[MEX][hapmap]
rs8027230	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33008400-33012600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
2	chr15:33008600-33010600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
3	chr15:33008600-33011800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr15:33008800-33009800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:33008800-33011600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr15:33008800-33012000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr15:33008800-33012000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
8	chr15:33008800-33012200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
9	chr15:33008800-33012600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:33009000-33009800	Bivalent Enhancer	Adipose Nuclei	Adipose
11	chr15:33009000-33009800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr15:33009000-33010000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
13	chr15:33009000-33010000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:33009000-33010000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
15	chr15:33009000-33010200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
16	chr15:33009000-33010600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
17	chr15:33009000-33011800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:33009000-33012000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr15:33009000-33012000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
20	chr15:33009000-33012000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
21	chr15:33009000-33012200	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr15:33009000-33013000	Bivalent/Poised TSS	NHLF	lung
23	chr15:33009200-33009800	Bivalent Enhancer	Fetal Intestine Small	intestine
24	chr15:33009200-33009800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
25	chr15:33009200-33010000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
26	chr15:33009200-33010200	Bivalent/Poised TSS	Right Ventricle	heart
27	chr15:33009200-33010400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:33009200-33010600	Bivalent Enhancer	Stomach Mucosa	stomach
29	chr15:33009200-33011400	Bivalent/Poised TSS	Psoas Muscle	Psoas
30	chr15:33009200-33011600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
31	chr15:33009200-33012000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr15:33009200-33012200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr15:33009200-33012200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:33009400-33009800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:33009400-33009800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:33009400-33009800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr15:33009400-33009800	Enhancers	Pancreas	Pancrea
38	chr15:33009400-33010000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:33009400-33010000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
40	chr15:33009400-33010000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
41	chr15:33009400-33010000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr15:33009400-33010200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:33009400-33010200	Enhancers	Gastric	stomach
44	chr15:33009400-33010200	Bivalent Enhancer	Thymus	Thymus
45	chr15:33009400-33010400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:33009400-33010400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:33009400-33010400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
48	chr15:33009400-33010400	Active TSS	HSMMtube	muscle
49	chr15:33009400-33010600	Bivalent/Poised TSS	Aorta	Aorta
50	chr15:33009400-33010800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon

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