Variant report

Variant	rs7182376
Chromosome Location	chr15:42866045-42866046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42838345..42842657-chr15:42865696..42868936,4	MCF-7	breast:
2	chr15:42840104..42842482-chr15:42865653..42867827,2	K562	blood:
3	chr15:42862243..42864590-chr15:42865875..42867418,2	K562	blood:
4	chr15:42783274..42784836-chr15:42864927..42867645,2	K562	blood:
5	chr15:42840090..42842755-chr15:42865653..42870684,5	K562	blood:
6	chr15:42854171..42864590-chr15:42864872..42869799,12	K562	blood:

Variant related genes	Relation type
ENSG00000180979	Chromatin interaction
ENSG00000260490	Chromatin interaction
ENSG00000261822	Chromatin interaction
ENSG00000137814	Chromatin interaction
ENSG00000092531	Chromatin interaction
ENSG00000103994	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10454692	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1048571	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11070375	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11630625	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11630681	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11633112	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11635041	0.84[EUR][1000 genomes]
rs11635076	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11635889	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11636209	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12438021	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12439377	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12440506	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17709596	0.82[EUR][1000 genomes]
rs17709867	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17766258	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17767264	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17767270	0.83[EUR][1000 genomes]
rs41315252	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56069741	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56172155	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62019280	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62019282	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62019285	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62019287	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62019294	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62019312	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62019315	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62019320	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62019322	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62022316	0.82[EUR][1000 genomes]
rs62022318	0.81[EUR][1000 genomes]
rs72711767	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8039240	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8042618	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976927	chr15:42862948-42868443	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7182376	CEP27	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42841600-42866800	Weak transcription	Stomach Mucosa	stomach
2	chr15:42841800-42867000	Weak transcription	Ovary	ovary
3	chr15:42842200-42867000	Weak transcription	Psoas Muscle	Psoas
4	chr15:42842400-42867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:42842600-42867400	Weak transcription	Small Intestine	intestine
6	chr15:42842800-42867000	Weak transcription	Fetal Kidney	kidney
7	chr15:42849400-42866800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:42851600-42866600	Weak transcription	Fetal Heart	heart
9	chr15:42852000-42867000	Weak transcription	Colonic Mucosa	Colon
10	chr15:42854200-42867000	Weak transcription	HSMMtube	muscle
11	chr15:42854800-42867000	Weak transcription	Pancreas	Pancrea
12	chr15:42855200-42867000	Weak transcription	Esophagus	oesophagus
13	chr15:42855200-42867800	Weak transcription	Aorta	Aorta
14	chr15:42856000-42867000	Weak transcription	A549	lung
15	chr15:42857600-42867000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:42857800-42867200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:42857800-42867200	Weak transcription	Spleen	Spleen
18	chr15:42858000-42867000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:42858200-42867000	Weak transcription	Right Ventricle	heart
20	chr15:42858400-42866400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:42858800-42867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:42858800-42867000	Weak transcription	Brain Substantia Nigra	brain
23	chr15:42858800-42867000	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:42859000-42867200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:42859000-42868000	Weak transcription	Fetal Brain Male	brain
26	chr15:42859200-42866400	Weak transcription	HepG2	liver
27	chr15:42859200-42867000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:42859200-42867000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:42859200-42867000	Weak transcription	Brain Angular Gyrus	brain
30	chr15:42859200-42867000	Weak transcription	Fetal Lung	lung
31	chr15:42859200-42867000	Weak transcription	HSMM	muscle
32	chr15:42859200-42867000	Weak transcription	NH-A	brain
33	chr15:42859200-42867000	Weak transcription	NHEK	skin
34	chr15:42859400-42866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:42859400-42866800	Weak transcription	Hela-S3	cervix
36	chr15:42859400-42867000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:42859400-42867000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:42859400-42867000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:42859400-42867800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:42859600-42866400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:42859600-42866400	Weak transcription	K562	blood
42	chr15:42859600-42866600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:42859600-42866800	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:42859600-42866800	Weak transcription	Placenta	Placenta
45	chr15:42859600-42867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:42859600-42867000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:42859600-42867000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:42859600-42867000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:42859600-42867000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr15:42859600-42867000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links