Variant report

Variant	rs7183273
Chromosome Location	chr15:40796197-40796198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:40796029-40796229	HepG2	liver:	n/a	chr15:40796092-40796105 chr15:40796092-40796103 chr15:40796093-40796104 chr15:40796092-40796105

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40731663..40736686-chr15:40795056..40800792,8	K562	blood:

Variant related genes	Relation type
ENSG00000259536	TF binding region
ENSG00000140320	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11070275	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070277	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11632061	0.86[AMR][1000 genomes]
rs11632370	0.81[AMR][1000 genomes]
rs11638742	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11639464	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12594548	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12595610	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12916042	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1806961	0.88[EUR][1000 genomes]
rs1811513	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1869301	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1869302	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1993212	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2034651	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2034652	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2167795	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2412531	0.81[AMR][1000 genomes]
rs2412532	0.81[AMR][1000 genomes]
rs2412534	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2444302	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2924386	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2924388	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2959536	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2959545	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4923875	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4923876	0.81[AMR][1000 genomes]
rs4924472	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4924478	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4924479	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4924480	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs588686	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590046	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs603623	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs616937	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs618399	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs619711	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs620198	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6492951	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs654317	0.83[EUR][1000 genomes]
rs7178756	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7494968	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8034326	0.81[EUR][1000 genomes]
rs9652415	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs976401	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs7183273	C15orf57	cis	lung	GTEx
rs7183273	RP11-111A22.1	cis	lung	GTEx
rs7183273	ZFYVE19	Cis_1M	lymphoblastoid	RTeQTL
rs7183273	RP11-111A22.1	cis	Artery Tibial	GTEx
rs7183273	C15orf57	cis	Adipose Subcutaneous	GTEx
rs7183273	C15orf57	cis	Nerve Tibial	GTEx
rs7183273	C15orf57	cis	Artery Tibial	GTEx
rs7183273	C15orf57	cis	Esophagus Muscularis	GTEx
rs7183273	CCDC32	Cis_1M	lymphoblastoid	RTeQTL
rs7183273	RP11-111A22.1	cis	Heart Left Ventricle	GTEx
rs7183273	RP11-111A22.1	cis	Muscle Skeletal	GTEx
rs7183273	C15orf57	cis	Artery Aorta	GTEx
rs7183273	C15orf57	cis	Esophagus Mucosa	GTEx
rs7183273	C15orf57	cis	Muscle Skeletal	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40786600-40799200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:40793400-40797200	Weak transcription	K562	blood
3	chr15:40793600-40798800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:40793800-40799200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:40793800-40799200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:40793800-40799200	Weak transcription	HMEC	breast
7	chr15:40794000-40798800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:40794000-40799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:40794000-40799000	Weak transcription	NHEK	skin
10	chr15:40794000-40799200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links