Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:40789021..40791161-chr15:40792541..40794393,2	K562	blood:
2	chr15:40788119..40791373-chr15:40792541..40795559,4	K562	blood:
3	chr15:40761859..40764280-chr15:40788423..40791384,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169105	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11070275	0.82[EUR][1000 genomes]
rs11638742	0.81[EUR][1000 genomes]
rs11639464	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12594548	0.81[AMR][1000 genomes]
rs12595610	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12916042	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1869301	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1869302	0.81[EUR][1000 genomes]
rs2034651	0.81[EUR][1000 genomes]
rs2034652	0.81[EUR][1000 genomes]
rs2167795	0.82[EUR][1000 genomes]
rs2444302	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2924386	0.81[EUR][1000 genomes]
rs2924388	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2959536	0.80[AMR][1000 genomes]
rs4924472	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4924478	0.81[EUR][1000 genomes]
rs4924479	0.81[AMR][1000 genomes]
rs588686	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs590046	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs603623	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs616937	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs618399	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs619711	0.80[AMR][1000 genomes]
rs620198	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6492951	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7178756	0.82[AMR][1000 genomes]
rs7183273	0.81[EUR][1000 genomes]
rs7494968	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9652415	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs8034326	C15orf57	cis	lung	GTEx
rs8034326	C15orf57	cis	Artery Tibial	GTEx
rs8034326	RP11-111A22.1	cis	Heart Left Ventricle	GTEx
rs8034326	RP11-111A22.1	cis	Muscle Skeletal	GTEx
rs8034326	RP11-111A22.1	cis	Artery Tibial	GTEx
rs8034326	C15orf57	cis	Esophagus Muscularis	GTEx
rs8034326	CCDC32	Cis_1M	lymphoblastoid	RTeQTL
rs8034326	ZFYVE19	Cis_1M	lymphoblastoid	RTeQTL
rs8034326	C15orf57	cis	Muscle Skeletal	GTEx
rs8034326	C15orf57	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40786000-40789600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:40786200-40791600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:40786200-40792400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:40786400-40791400	Weak transcription	Hela-S3	cervix
5	chr15:40786600-40792800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:40786600-40799200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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