Variant report

Variant	rs7183881
Chromosome Location	chr15:83340571-83340572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83340452..83341988-chr15:83417558..83419179,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10400906	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10468217	0.90[ASN][1000 genomes]
rs10906984	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1145172	0.86[ASN][1000 genomes]
rs1145173	0.86[ASN][1000 genomes]
rs11631963	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11633829	0.97[ASN][1000 genomes]
rs11635624	0.87[ASN][1000 genomes]
rs11637433	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11855735	0.96[ASN][1000 genomes]
rs12148332	0.92[ASN][1000 genomes]
rs12438312	0.96[ASN][1000 genomes]
rs12442686	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1259180	0.91[ASN][1000 genomes]
rs1259182	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1259183	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1267657	0.88[ASN][1000 genomes]
rs1267658	0.86[ASN][1000 genomes]
rs1267659	0.86[ASN][1000 genomes]
rs1269134	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12911134	0.93[ASN][1000 genomes]
rs12916980	0.99[ASN][1000 genomes]
rs1313492	0.94[ASN][1000 genomes]
rs1313493	0.94[ASN][1000 genomes]
rs1367841	0.99[ASN][1000 genomes]
rs1594511	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17158390	0.98[ASN][1000 genomes]
rs1864699	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2099259	0.99[ASN][1000 genomes]
rs2278355	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2567635	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2567636	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2678445	0.87[ASN][1000 genomes]
rs2678448	0.92[ASN][1000 genomes]
rs28374463	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28415133	0.92[ASN][1000 genomes]
rs28667458	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2870965	0.94[ASN][1000 genomes]
rs2870966	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28808991	0.94[ASN][1000 genomes]
rs34186444	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35934048	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36109438	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3970696	0.92[ASN][1000 genomes]
rs4778686	0.99[ASN][1000 genomes]
rs4779032	0.91[ASN][1000 genomes]
rs4779039	0.90[ASN][1000 genomes]
rs4779041	0.99[ASN][1000 genomes]
rs4779044	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4779050	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4779053	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4779054	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55924160	0.98[ASN][1000 genomes]
rs57181760	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6603033	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs698500	0.89[ASN][1000 genomes]
rs7165125	0.96[ASN][1000 genomes]
rs7166248	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7167880	0.98[ASN][1000 genomes]
rs7171180	0.99[ASN][1000 genomes]
rs7178350	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7181761	0.90[ASN][1000 genomes]
rs7182403	0.97[ASN][1000 genomes]
rs7494860	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7496954	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs783520	0.96[ASN][1000 genomes]
rs783521	0.98[ASN][1000 genomes]
rs783522	0.98[ASN][1000 genomes]
rs783523	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs783525	0.98[ASN][1000 genomes]
rs783526	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs783527	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs783529	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs783530	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs783531	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs783532	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs783533	0.94[ASN][1000 genomes]
rs783534	0.94[ASN][1000 genomes]
rs783535	0.92[ASN][1000 genomes]
rs783536	0.94[ASN][1000 genomes]
rs783537	0.90[ASN][1000 genomes]
rs783539	0.92[ASN][1000 genomes]
rs783540	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs783543	0.84[ASN][1000 genomes]
rs783545	0.90[ASN][1000 genomes]
rs803687	0.84[ASN][1000 genomes]
rs803688	0.86[ASN][1000 genomes]
rs803747	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8040293	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8043401	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9652567	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054171	chr15:83237514-83468077	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1036950	chr15:83245326-83461261	Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1036462	chr15:83245326-83472507	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv34318	chr15:83283555-83453495	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1039021	chr15:83283994-83431548	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3493740	chr15:83295897-83458896	Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	esv3493739	chr15:83296247-83458846	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	esv3493738	chr15:83296905-83457854	Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	esv3493742	chr15:83296993-83457792	Weak transcription Active TSS Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv817702	chr15:83299461-83457424	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	esv1808975	chr15:83307574-83360168	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7183881	FLJ40113///LOC161527///LOC440295///LOC642346	N/A	lymphoblastoid	RTeQTL
rs7183881	RP11-152F13.8	cis	Esophagus Mucosa	GTEx
rs7183881	LOC402057///RPS17	trans	lymphoblastoid	RTeQTL
rs7183881	RPS17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83328800-83342600	Weak transcription	Brain Substantia Nigra	brain
2	chr15:83331400-83346600	Weak transcription	Fetal Brain Male	brain
3	chr15:83334600-83342800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:83334800-83344400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:83335200-83349200	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:83335600-83344200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:83335800-83343200	Weak transcription	Brain Anterior Caudate	brain
8	chr15:83336000-83341600	Weak transcription	Brain Germinal Matrix	brain
9	chr15:83336800-83348200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:83337400-83342800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:83337800-83342600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:83337800-83342600	Weak transcription	Brain Angular Gyrus	brain
13	chr15:83337800-83343600	Weak transcription	Fetal Brain Female	brain
14	chr15:83340200-83348600	Weak transcription	Pancreas	Pancrea

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