Variant report

Variant	rs7184570
Chromosome Location	chr16:80575473-80575474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr16:80574314-80575528	IMR90	lung:	n/a	chr16:80575305-80575315
2	RCOR1	chr16:80574342-80575525	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80573239..80577400-chr16:80578381..80583465,6	MCF-7	breast:

Variant related genes	Relation type
DYNLRB2	TF binding region
ENSG00000259867	TF binding region
ENSG00000168589	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4888099	1.00[AMR][1000 genomes]
rs7206412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80574000-80575600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr16:80574000-80575600	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr16:80574000-80575600	Active TSS	HSMMtube	muscle
4	chr16:80574200-80575600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr16:80574200-80575600	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr16:80574200-80575800	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr16:80574200-80575800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr16:80574200-80575800	Active TSS	Fetal Brain Male	brain
9	chr16:80574400-80575600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr16:80574400-80575800	Active TSS	Brain Anterior Caudate	brain
11	chr16:80574600-80575600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr16:80574600-80575600	Active TSS	Fetal Kidney	kidney
13	chr16:80575000-80575600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr16:80575200-80575600	Enhancers	Primary hematopoietic stem cells	blood
15	chr16:80575200-80575600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr16:80575200-80575600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr16:80575400-80575600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:80575400-80575600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr16:80575400-80575600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr16:80575400-80575600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr16:80575400-80575600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr16:80575400-80575600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:80575400-80575600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:80575400-80575600	Enhancers	Liver	Liver
25	chr16:80575400-80575600	Enhancers	Brain Germinal Matrix	brain
26	chr16:80575400-80575600	Enhancers	Brain Hippocampus Middle	brain
27	chr16:80575400-80575600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr16:80575400-80575600	Enhancers	Fetal Intestine Small	intestine
29	chr16:80575400-80575600	Enhancers	Fetal Lung	lung
30	chr16:80575400-80575600	Enhancers	NHEK	skin
31	chr16:80575400-80575600	Enhancers	Osteobl	bone
32	chr16:80575400-80575800	Enhancers	Brain Cingulate Gyrus	brain
33	chr16:80575400-80575800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr16:80575400-80577000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr16:80575400-80578400	Weak transcription	Placenta	Placenta
36	chr16:80575400-80579800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr16:80575400-80587200	Weak transcription	Pancreas	Pancrea
38	chr16:80575400-80587800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links