Variant report

Variant	rs7206412
Chromosome Location	chr16:80575655-80575656
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4888099	1.00[AMR][1000 genomes]
rs7184570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8057411	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80574200-80575800	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr16:80574200-80575800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr16:80574200-80575800	Active TSS	Fetal Brain Male	brain
4	chr16:80574400-80575800	Active TSS	Brain Anterior Caudate	brain
5	chr16:80575400-80575800	Enhancers	Brain Cingulate Gyrus	brain
6	chr16:80575400-80575800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr16:80575400-80577000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr16:80575400-80578400	Weak transcription	Placenta	Placenta
9	chr16:80575400-80579800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr16:80575400-80587200	Weak transcription	Pancreas	Pancrea
11	chr16:80575400-80587800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr16:80575600-80575800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr16:80575600-80577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:80575600-80577800	Weak transcription	Liver	Liver
15	chr16:80575600-80577800	Weak transcription	NHEK	skin
16	chr16:80575600-80578000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr16:80575600-80578000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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