Variant report
| Variant | rs7188021 |
|---|---|
| Chromosome Location | chr16:71454596-71454597 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71452691..71455669-chr16:71459394..71461176,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261348 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10468265 | 1.00[ASN][1000 genomes] |
| rs11866859 | 1.00[ASN][1000 genomes] |
| rs13336809 | 1.00[ASN][1000 genomes] |
| rs16972266 | 1.00[ASN][1000 genomes] |
| rs16972805 | 1.00[ASN][1000 genomes] |
| rs16972808 | 1.00[ASN][1000 genomes] |
| rs16973000 | 1.00[ASN][1000 genomes] |
| rs16973112 | 1.00[ASN][1000 genomes] |
| rs16973190 | 1.00[ASN][1000 genomes] |
| rs2052873 | 1.00[ASN][1000 genomes] |
| rs3886947 | 1.00[ASN][1000 genomes] |
| rs56222754 | 1.00[ASN][1000 genomes] |
| rs61171207 | 1.00[ASN][1000 genomes] |
| rs7197127 | 1.00[ASN][1000 genomes] |
| rs72791971 | 1.00[ASN][1000 genomes] |
| rs72795864 | 1.00[ASN][1000 genomes] |
| rs72795869 | 1.00[ASN][1000 genomes] |
| rs72795881 | 1.00[ASN][1000 genomes] |
| rs8044168 | 1.00[ASN][1000 genomes] |
| rs8049040 | 1.00[ASN][1000 genomes] |
| rs8050135 | 1.00[ASN][1000 genomes] |
| rs8051439 | 1.00[ASN][1000 genomes] |
| rs8056735 | 1.00[ASN][1000 genomes] |
| rs9940485 | 1.00[ASN][1000 genomes] |
| rs9989377 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064435 | chr16:71440719-71488771 | Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | esv3360088 | chr16:71451349-71454824 | Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv977998 | chr16:71454098-71457409 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71446800-71459600 | Weak transcription | Spleen | Spleen |
| 2 | chr16:71448200-71455600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
