Variant report
| Variant | rs7197127 |
|---|---|
| Chromosome Location | chr16:71473836-71473837 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000247324 | Chromatin interaction |
| ENSG00000167377 | Chromatin interaction |
| ENSG00000260734 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10468265 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11866859 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs13336809 | 1.00[ASN][1000 genomes] |
| rs16972266 | 1.00[ASN][1000 genomes] |
| rs16972805 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16972808 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16973000 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16973112 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16973190 | 1.00[ASN][1000 genomes] |
| rs2052873 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs3886947 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4258624 | 1.00[JPT][hapmap] |
| rs56222754 | 1.00[ASN][1000 genomes] |
| rs61171207 | 1.00[ASN][1000 genomes] |
| rs7188021 | 1.00[ASN][1000 genomes] |
| rs7203200 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72791971 | 1.00[ASN][1000 genomes] |
| rs72795864 | 1.00[ASN][1000 genomes] |
| rs72795869 | 1.00[ASN][1000 genomes] |
| rs72795881 | 1.00[ASN][1000 genomes] |
| rs8044168 | 1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8049040 | 1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8050135 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8051439 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs8053993 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs8056735 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9940485 | 1.00[ASN][1000 genomes] |
| rs9989377 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064435 | chr16:71440719-71488771 | Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71473800-71474600 | Weak transcription | Spleen | Spleen |
