Variant report

Variant	rs7188170
Chromosome Location	chr16:82179757-82179758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82170213..82174323-chr16:82178396..82183619,5	MCF-7	breast:
2	chr16:82177951..82181955-chr16:82182501..82188169,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261235	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13337888	1.00[EUR][1000 genomes]
rs16944454	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956466	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956540	0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956562	0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28637993	1.00[EUR][1000 genomes]
rs57109607	1.00[EUR][1000 genomes]
rs58555653	1.00[EUR][1000 genomes]
rs58852226	1.00[EUR][1000 genomes]
rs59651447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59902565	1.00[EUR][1000 genomes]
rs60263276	1.00[EUR][1000 genomes]
rs6564969	1.00[EUR][1000 genomes]
rs6564970	1.00[EUR][1000 genomes]
rs6564985	1.00[MEX][hapmap]
rs6564986	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6564988	0.94[LWK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs7184881	0.92[AFR][1000 genomes]
rs7186070	0.92[AFR][1000 genomes]
rs7186267	0.83[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7191392	0.92[AFR][1000 genomes]
rs7191907	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7193358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7195032	0.84[AFR][1000 genomes]
rs7195527	0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202424	0.88[AFR][1000 genomes]
rs73589621	1.00[EUR][1000 genomes]
rs73589633	1.00[EUR][1000 genomes]
rs73589649	1.00[EUR][1000 genomes]
rs73589675	1.00[EUR][1000 genomes]
rs73589681	1.00[EUR][1000 genomes]
rs73589694	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589701	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591415	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591419	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591424	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591440	0.84[AFR][1000 genomes]
rs73591450	0.90[AFR][1000 genomes]
rs73591453	0.90[AFR][1000 genomes]
rs73591454	0.90[AFR][1000 genomes]
rs73591486	0.84[AFR][1000 genomes]
rs73591491	0.83[AFR][1000 genomes]
rs73604956	1.00[EUR][1000 genomes]
rs8048876	1.00[EUR][1000 genomes]
rs8049032	0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8056380	0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs8057418	0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs9929702	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv457578	chr16:82136566-82197883	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv573366	chr16:82136566-82197883	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv457579	chr16:82150293-82216622	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv573368	chr16:82150293-82216622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907013	chr16:82154619-82196808	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv525467	chr16:82154619-82223485	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv457580	chr16:82165183-82182104	Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv573369	chr16:82165183-82182104	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv573370	chr16:82165183-82185320	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1061064	chr16:82165314-82213799	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1056381	chr16:82165314-82215388	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1062687	chr16:82165516-82213799	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82157000-82191200	Weak transcription	Fetal Brain Male	brain
2	chr16:82167600-82180600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:82167800-82180200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr16:82168000-82181000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr16:82168000-82195400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr16:82168400-82180800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr16:82168400-82195600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr16:82168600-82180400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr16:82168600-82191000	Weak transcription	HSMMtube	muscle
10	chr16:82168600-82195600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr16:82168800-82180600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr16:82168800-82180600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr16:82168800-82180800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr16:82168800-82182000	Weak transcription	NH-A	brain
15	chr16:82169000-82180000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr16:82169000-82180200	Weak transcription	Primary B cells from cord blood	blood
17	chr16:82169200-82180600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr16:82169400-82180000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr16:82170000-82180800	Weak transcription	Fetal Lung	lung
20	chr16:82170200-82180400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr16:82170600-82180400	Weak transcription	A549	lung
22	chr16:82170800-82180600	Weak transcription	Left Ventricle	heart
23	chr16:82170800-82180600	Weak transcription	Lung	lung
24	chr16:82170800-82195800	Weak transcription	Colon Smooth Muscle	Colon
25	chr16:82171000-82180400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr16:82171000-82180400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr16:82171000-82180600	Weak transcription	Colonic Mucosa	Colon
28	chr16:82171000-82180800	Weak transcription	Right Ventricle	heart
29	chr16:82171200-82185800	Weak transcription	Fetal Intestine Small	intestine
30	chr16:82171200-82193400	Weak transcription	Ovary	ovary
31	chr16:82171400-82179800	Weak transcription	Adipose Nuclei	Adipose
32	chr16:82171400-82180000	Weak transcription	NHDF-Ad	bronchial
33	chr16:82171400-82180600	Weak transcription	Spleen	Spleen
34	chr16:82171600-82180600	Weak transcription	Osteobl	bone
35	chr16:82172000-82180600	Weak transcription	GM12878-XiMat	blood
36	chr16:82172200-82180400	Weak transcription	Fetal Kidney	kidney
37	chr16:82172600-82180400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr16:82172600-82180400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr16:82172600-82180400	Weak transcription	Thymus	Thymus
40	chr16:82172600-82180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr16:82172600-82180600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr16:82172800-82180400	Weak transcription	HepG2	liver
43	chr16:82172800-82199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr16:82173000-82180000	Weak transcription	Esophagus	oesophagus
45	chr16:82173000-82180400	Weak transcription	K562	blood
46	chr16:82173000-82180600	Weak transcription	Gastric	stomach
47	chr16:82173200-82180400	Weak transcription	Fetal Thymus	thymus
48	chr16:82173200-82180600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr16:82173200-82182400	Weak transcription	Fetal Intestine Large	intestine
50	chr16:82173400-82180400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links