Variant report

Variant	rs718937
Chromosome Location	chr11:4059890-4059891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1013351	1.00[YRI][hapmap]
rs10500590	1.00[YRI][hapmap]
rs10767715	1.00[YRI][hapmap]
rs10767767	1.00[YRI][hapmap]
rs10835311	1.00[YRI][hapmap]
rs10835340	1.00[YRI][hapmap]
rs10835399	1.00[YRI][hapmap]
rs10835402	1.00[YRI][hapmap]
rs10835403	1.00[YRI][hapmap]
rs10835406	1.00[YRI][hapmap]
rs10835407	1.00[YRI][hapmap]
rs10835521	1.00[YRI][hapmap]
rs10835556	1.00[YRI][hapmap]
rs10835561	1.00[YRI][hapmap]
rs10835596	1.00[YRI][hapmap]
rs10835601	1.00[YRI][hapmap]
rs11030276	1.00[YRI][hapmap]
rs12281293	1.00[YRI][hapmap]
rs1452047	1.00[YRI][hapmap]
rs2898947	1.00[YRI][hapmap]
rs4910875	1.00[YRI][hapmap]
rs4910880	1.00[YRI][hapmap]
rs720571	1.00[YRI][hapmap]
rs995498	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1042719	chr11:4017541-4101609	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4038200-4065200	Weak transcription	Left Ventricle	heart
2	chr11:4038400-4065400	Weak transcription	Esophagus	oesophagus
3	chr11:4046000-4061400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr11:4047400-4061400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:4047800-4077400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:4048000-4060000	Weak transcription	NHDF-Ad	bronchial
7	chr11:4048000-4077600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:4048400-4061400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:4048400-4061800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:4048400-4062000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:4048400-4063200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:4048400-4065800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:4048600-4077800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:4049600-4070600	Weak transcription	Thymus	Thymus
15	chr11:4049800-4065400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:4050200-4070800	Weak transcription	Fetal Thymus	thymus
17	chr11:4051000-4080400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:4051200-4070200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:4051400-4065400	Weak transcription	Pancreas	Pancrea
20	chr11:4054800-4065000	Weak transcription	Liver	Liver
21	chr11:4055200-4061800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:4056600-4061800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:4057400-4076800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:4058200-4070800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:4058800-4065400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:4058800-4065600	Weak transcription	Primary B cells from cord blood	blood
27	chr11:4058800-4070800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:4059200-4076800	Weak transcription	GM12878-XiMat	blood
29	chr11:4059600-4060400	Strong transcription	Primary T cells from cord blood	blood
30	chr11:4059800-4060000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:4059800-4060000	Enhancers	Psoas Muscle	Psoas
32	chr11:4059800-4060000	Enhancers	HepG2	liver

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