Variant report

Variant	rs7197720
Chromosome Location	chr16:46438104-46438105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs74016114	1.00[EUR][1000 genomes]
rs74016167	1.00[EUR][1000 genomes]
rs8044124	1.00[EUR][1000 genomes]
rs8059838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351345	chr16:46385802-46460549	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv3415772	chr16:46385802-46461249	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv3348821	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv3362417	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3418529	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	esv3433355	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv482466	chr16:46385802-46508907	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv572449	chr16:46385922-46443964	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv572450	chr16:46385922-46450037	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
10	nsv572451	chr16:46385922-46452565	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
11	nsv572452	chr16:46385922-46498901	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
12	nsv572453	chr16:46385922-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
13	nsv572454	chr16:46385922-46499821	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
14	nsv572455	chr16:46385922-46500009	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
15	nsv572456	chr16:46385922-46500195	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
16	nsv572457	chr16:46385922-46500302	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
17	nsv572458	chr16:46385922-46500451	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
18	nsv433447	chr16:46386457-46479625	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
19	nsv572459	chr16:46386457-46539392	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
20	esv1799780	chr16:46386457-46875496	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1813432	chr16:46402997-46499280	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
22	esv1809860	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
23	esv1847123	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
24	esv1850910	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
25	esv1847006	chr16:46402997-46500451	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
26	esv995719	chr16:46409302-46454077	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
27	esv12819	chr16:46409917-46456838	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
28	esv8116	chr16:46417038-46441408	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
29	esv3421458	chr16:46417216-46450222	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
30	esv3501894	chr16:46423858-46443004	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
31	esv3501895	chr16:46423858-46443004	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
32	esv1795825	chr16:46426950-46450552	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
33	esv1823901	chr16:46426950-46450552	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
34	esv1829142	chr16:46426950-46450552	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
35	esv1839204	chr16:46426950-46453815	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
36	esv1812329	chr16:46426950-46499613	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
37	esv2572179	chr16:46427717-46499888	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
38	nsv572460	chr16:46428961-46500195	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
39	esv3430448	chr16:46429662-46453218	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
40	esv3379359	chr16:46429682-46453188	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
41	esv3340969	chr16:46434414-46454518	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
42	nsv103457	chr16:46434929-46443317	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
43	esv20494	chr16:46435600-46456838	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	inside rSNPs	n/a
44	esv1802915	chr16:46435905-46450552	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	n/a
45	nsv572461	chr16:46435905-46452565	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	n/a
46	nsv572462	chr16:46435905-46453815	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	n/a
47	nsv572463	chr16:46435905-46498780	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
48	nsv572464	chr16:46435905-46499280	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
49	nsv572465	chr16:46435905-46499331	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	n/a
50	nsv572466	chr16:46435905-46499613	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46419800-46444400	ZNF genes & repeats	Primary T cells from cord blood	blood
2	chr16:46431200-46444800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
3	chr16:46431200-46445000	ZNF genes & repeats	Dnd41	blood
4	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
5	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
13	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
14	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
18	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr16:46434400-46438400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
20	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:46434600-46439800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
23	chr16:46434600-46440600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
25	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
26	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
28	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
31	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
32	chr16:46435400-46444400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
34	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
35	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
36	chr16:46436800-46445600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
37	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
38	chr16:46437200-46439400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
39	chr16:46437200-46439600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:46437200-46439800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
41	chr16:46437400-46438200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
42	chr16:46437400-46438200	ZNF genes & repeats	Right Atrium	heart
43	chr16:46437400-46439200	ZNF genes & repeats	Gastric	stomach
44	chr16:46437400-46439600	ZNF genes & repeats	Colon Smooth Muscle	Colon
45	chr16:46437400-46440200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
46	chr16:46437400-46444200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
47	chr16:46437400-46444400	ZNF genes & repeats	Brain Hippocampus Middle	brain
48	chr16:46437400-46444600	ZNF genes & repeats	Brain Angular Gyrus	brain
49	chr16:46437600-46439000	ZNF genes & repeats	Aorta	Aorta
50	chr16:46437600-46439400	ZNF genes & repeats	GM12878-XiMat	blood

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