Variant report

Variant	rs7198100
Chromosome Location	chr16:79936755-79936756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55731323	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60163449	0.82[ASN][1000 genomes]
rs7193765	1.00[AMR][1000 genomes]
rs7196167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7196727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7197500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7204861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73576036	0.82[ASN][1000 genomes]
rs73576037	0.82[ASN][1000 genomes]
rs73576054	0.82[ASN][1000 genomes]
rs73576055	0.82[ASN][1000 genomes]
rs73576058	0.82[ASN][1000 genomes]
rs73576077	0.82[ASN][1000 genomes]
rs74040120	0.88[ASN][1000 genomes]
rs9935355	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79936200-79938400	Enhancers	Ovary	ovary
2	chr16:79936400-79936800	Enhancers	Osteobl	bone
3	chr16:79936400-79937200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:79936600-79936800	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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