Variant report

Variant	rs73576055
Chromosome Location	chr16:79928503-79928504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79926658..79928778-chr16:79932145..79933680,2	MCF-7	breast:
2	chr16:79924695..79926567-chr16:79927606..79930494,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10514468	0.91[EUR][1000 genomes]
rs12149386	0.91[EUR][1000 genomes]
rs12149402	0.91[EUR][1000 genomes]
rs12149430	0.91[EUR][1000 genomes]
rs4421996	0.91[EUR][1000 genomes]
rs4423433	0.91[EUR][1000 genomes]
rs4578665	0.91[EUR][1000 genomes]
rs55731323	0.82[ASN][1000 genomes]
rs56015959	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60163449	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60450864	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7196167	0.82[ASN][1000 genomes]
rs7196727	0.82[ASN][1000 genomes]
rs7197500	0.82[ASN][1000 genomes]
rs7198100	0.82[ASN][1000 genomes]
rs7204861	0.82[ASN][1000 genomes]
rs73576036	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73576037	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73576054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73576058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73576065	1.00[EUR][1000 genomes]
rs73576077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74038077	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74038078	0.91[EUR][1000 genomes]
rs74038079	0.91[EUR][1000 genomes]
rs74038082	0.91[EUR][1000 genomes]
rs74038084	0.91[EUR][1000 genomes]
rs74040120	0.93[ASN][1000 genomes]
rs74040137	0.91[EUR][1000 genomes]
rs74040138	0.91[EUR][1000 genomes]
rs74040147	0.91[EUR][1000 genomes]
rs8049733	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79908800-79931400	Weak transcription	Right Atrium	heart
2	chr16:79925800-79929200	Weak transcription	Fetal Intestine Large	intestine
3	chr16:79927200-79929000	Weak transcription	Liver	Liver
4	chr16:79927400-79929000	Weak transcription	K562	blood
5	chr16:79927800-79930400	Weak transcription	HepG2	liver

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