Variant report

Variant	rs74038084
Chromosome Location	chr16:79913419-79913420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79913200..79915535-chr16:79917130..79919607,2	MCF-7	breast:
2	chr16:79905342..79909928-chr16:79910179..79915093,7	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10514468	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12149386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12149402	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12149430	1.00[EUR][1000 genomes]
rs4324139	0.82[AMR][1000 genomes]
rs4421996	0.83[EUR][1000 genomes]
rs4423433	0.83[EUR][1000 genomes]
rs4578665	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4614738	0.82[AMR][1000 genomes]
rs4620970	0.82[AMR][1000 genomes]
rs56015959	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58814461	0.82[AMR][1000 genomes]
rs60163449	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60450864	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60483676	0.82[AMR][1000 genomes]
rs73576036	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73576037	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73576054	0.91[EUR][1000 genomes]
rs73576055	0.91[EUR][1000 genomes]
rs73576058	0.91[EUR][1000 genomes]
rs73576065	0.91[EUR][1000 genomes]
rs73576077	0.91[EUR][1000 genomes]
rs74038056	0.82[AMR][1000 genomes]
rs74038077	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74038078	1.00[EUR][1000 genomes]
rs74038079	1.00[EUR][1000 genomes]
rs74038082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74040137	0.83[EUR][1000 genomes]
rs74040138	0.83[EUR][1000 genomes]
rs74040147	0.83[EUR][1000 genomes]
rs8049733	1.00[EUR][1000 genomes]
rs8062047	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv906993	chr16:79883850-79923310	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv906994	chr16:79883850-79928186	Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv34919	chr16:79889959-79923310	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv457555	chr16:79893737-79926134	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv471100	chr16:79893737-79926134	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv573292	chr16:79893737-79926134	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2757646	chr16:79894964-79923310	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2758662	chr16:79894964-79923310	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv457556	chr16:79896825-79926134	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv573293	chr16:79896825-79926134	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79908800-79931400	Weak transcription	Right Atrium	heart
2	chr16:79910000-79915800	Weak transcription	Fetal Lung	lung
3	chr16:79910800-79914000	Weak transcription	K562	blood
4	chr16:79912200-79914200	Weak transcription	GM12878-XiMat	blood

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