Variant report

Variant	rs7198315
Chromosome Location	chr16:71422958-71422959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10852501	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12103005	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12925159	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2018719	0.83[EUR][1000 genomes]
rs7191938	0.81[EUR][1000 genomes]
rs7203957	0.84[EUR][1000 genomes]
rs8063760	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71419400-71423400	Weak transcription	Adipose Nuclei	Adipose
2	chr16:71420600-71423600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:71421400-71423400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:71421800-71423400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr16:71421800-71423400	Weak transcription	Esophagus	oesophagus
6	chr16:71422000-71423200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr16:71422000-71423200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:71422000-71423600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr16:71422000-71423600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr16:71422000-71424000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr16:71422200-71423400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr16:71422200-71423400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr16:71422200-71426600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:71422600-71423000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr16:71422800-71423200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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