Variant report

Variant	rs8063760
Chromosome Location	chr16:71423906-71423907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10852501	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12103005	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12925159	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12925320	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2018719	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4327058	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4788801	0.86[ASN][1000 genomes]
rs67771172	0.80[ASN][1000 genomes]
rs7191938	0.90[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs7198315	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7203957	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7500119	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71422000-71424000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr16:71422200-71426600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:71423000-71424600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr16:71423200-71424200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr16:71423200-71424400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr16:71423200-71424400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr16:71423400-71424200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr16:71423400-71424200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:71423400-71424600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr16:71423400-71424600	Strong transcription	Adipose Nuclei	Adipose
11	chr16:71423600-71424200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:71423600-71424400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr16:71423600-71424400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links