Variant report

Variant	rs7198478
Chromosome Location	chr16:31292773-31292774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11574629	0.89[AMR][1000 genomes]
rs11861799	1.00[EUR][1000 genomes]
rs3948508	0.87[AFR][1000 genomes]
rs41374952	0.93[AFR][1000 genomes]
rs4889541	0.87[AFR][1000 genomes]
rs4889643	0.88[AFR][1000 genomes]
rs59668899	0.89[AMR][1000 genomes]
rs61175519	0.89[AMR][1000 genomes]
rs7192505	0.89[AMR][1000 genomes]
rs7198540	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8045402	0.89[AMR][1000 genomes]
rs8045430	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8056264	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8058958	0.89[AMR][1000 genomes]
rs8060548	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8063024	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31289400-31295200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr16:31290000-31295200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:31290000-31301400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr16:31290000-31310200	Weak transcription	Spleen	Spleen
5	chr16:31290400-31293600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr16:31290400-31293600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr16:31290400-31295200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr16:31292600-31293600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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