Variant report

Variant	rs4889541
Chromosome Location	chr16:31274551-31274552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31272641..31274677-chr16:31278876..31282230,3	MCF-7	breast:
2	chr16:31266292..31269250-chr16:31272108..31275023,2	K562	blood:
3	chr16:31189511..31193745-chr16:31272815..31274758,3	MCF-7	breast:
4	chr16:31192016..31194265-chr16:31272981..31274956,2	MCF-7	breast:
5	chr16:31225561..31229093-chr16:31271713..31276905,6	MCF-7	breast:
6	chr16:31273033..31275008-chr16:31278904..31280780,2	K562	blood:
7	chr16:31190285..31192717-chr16:31272229..31274986,2	K562	blood:

Variant related genes	Relation type
ENSG00000089280	Chromatin interaction
ENSG00000169900	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10871455	0.89[AMR][1000 genomes]
rs12920848	0.89[AMR][1000 genomes]
rs12934814	0.89[AMR][1000 genomes]
rs1423934	1.00[AMR][1000 genomes]
rs2081224	0.89[AMR][1000 genomes]
rs2098730	0.89[AMR][1000 genomes]
rs3948508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41374952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41441649	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4260075	0.81[AFR][1000 genomes]
rs4889637	0.89[AMR][1000 genomes]
rs4889638	0.89[AMR][1000 genomes]
rs4889641	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4889642	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889643	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6565221	1.00[AMR][1000 genomes]
rs7192718	0.89[AMR][1000 genomes]
rs7198478	0.87[AFR][1000 genomes]
rs7198540	0.91[AFR][1000 genomes]
rs8045430	0.91[AFR][1000 genomes]
rs8056264	0.86[AFR][1000 genomes]
rs8060548	0.87[AFR][1000 genomes]
rs8063978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs889552	0.89[AMR][1000 genomes]
rs929867	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31265200-31276600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:31265800-31276400	Weak transcription	A549	lung
3	chr16:31269800-31277800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:31270400-31275000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr16:31271200-31276400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr16:31271400-31276000	Weak transcription	Fetal Thymus	thymus
7	chr16:31271800-31274600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr16:31272000-31276400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr16:31272000-31276600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr16:31272000-31277000	Enhancers	Primary B cells from peripheral blood	blood
11	chr16:31272200-31274600	Weak transcription	Primary T cells from cord blood	blood
12	chr16:31272200-31274600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr16:31272200-31276400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr16:31272200-31276600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr16:31272200-31276600	Weak transcription	Spleen	Spleen
16	chr16:31272200-31276800	Weak transcription	Placenta	Placenta
17	chr16:31272200-31277000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr16:31272200-31277600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr16:31272400-31277400	Enhancers	Primary hematopoietic stem cells	blood
20	chr16:31272600-31274600	Weak transcription	K562	blood
21	chr16:31272600-31276200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr16:31272600-31276600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr16:31273000-31276200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr16:31273000-31277000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr16:31273200-31276800	Weak transcription	Pancreas	Pancrea
26	chr16:31273600-31276000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:31273800-31275800	Enhancers	Primary T cells fromperipheralblood	blood
28	chr16:31274000-31276400	Enhancers	GM12878-XiMat	blood
29	chr16:31274000-31277600	Enhancers	Primary B cells from cord blood	blood
30	chr16:31274200-31276000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr16:31274200-31277600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
32	chr16:31274400-31274800	Enhancers	Primary T helper naive cells from peripheral blood	blood

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